Name: Aminiphilus circumscriptus ILE-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17782

Type strain:

Species: Aminiphilus circumscriptus

Strain Designation: ILE-2

Culture col. no.: DSM 16581, JCM 14039

Strain history: M.-L. Fardeau ILE-2.

NCBI tax ID(s): 1304874 (strain), 290732 (species)

SI-ID 309424

DSM 16581, JCM 14039

Section

Aminiphilus circumscriptus ILE-2 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from anaerobic sludge from a brewery wastewater-treatment plant.

Gram-negative
motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Synergistota*
	Class	*Synergistia*
	Order	*Synergistales*
	Family	*Aminiphilaceae*
	Genus	*Aminiphilus*
	Species	**Aminiphilus circumscriptus**
	Full Scientific Name (LPSN)	Aminiphilus circumscriptus Díaz et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31459]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.976

[Ref.: #31459]	Cell length	3 µm

[Ref.: #31459]	Cell width	0.1 µm

[Ref.: #31459]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.596

[Ref.: #31459]

Pigment production

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

[Ref.: #66793]

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electron microscopic image

[Ref.: #66793]

Intellectual property rights:

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6515]

Culture medium

AMINIPHILUS MEDIUM (DSMZ Medium 1082)

[Ref.: #6515]

Culture medium growth

[Ref.: #6515]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6515]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6515]	growth	37 °C
[Ref.: #31459]	growth	25-55 °C
[Ref.: #31459]	optimum	42 °C
[Ref.: #67770]	growth	40 °C

[Ref.: #6515]	Temperature range	mesophilic
[Ref.: #31459]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31459]			optimum	7.1
[Ref.: #31459]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6515]	Oxygen tolerance	anaerobe
[Ref.: #31459]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.266

[Ref.: #31459]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %92
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.93

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31459]		NaCl		growth	0-2.5	%
[Ref.: #31459]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31459]	alanine ChEBI	+	carbon source
[Ref.: #31459]	arginine ChEBI	+	carbon source
[Ref.: #31459]	glutamate ChEBI	+	carbon source
[Ref.: #31459]	glycerol ChEBI	+	carbon source
[Ref.: #31459]	histidine ChEBI	+	carbon source
[Ref.: #31459]	malate ChEBI	+	carbon source
[Ref.: #31459]	pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6515]	Sample type/isolated from	anaerobic sludge from a brewery wastewater-treatment plant
[Ref.: #6515]	Country	Colombia
[Ref.: #6515]	Country ISO 3 Code	COL
[Ref.: #6515]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Upflow anaerobic sludge bed reactor treating brewery wastewater
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bogotá
[Ref.: #67770]	Country	Colombia
[Ref.: #67770]	Country ISO 3 Code	COL
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Industrial wastewater
#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY642589 (>99% sequence identity) for Aminiphilus from Microbeatlas

Aquatic Samples	78
Soil Samples	19
Animal Samples	4
Plant Samples
Total Samples	101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6515]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6515]	Aminiphilus circumscriptus strain ILE-2 16S ribosomal RNA gene, partial sequence	AY642589	1416	ENA	290732 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aminiphilus circumscriptus DSM 16581	GCA_000526375	contig	GenBank	1304874 tax ID
[Ref.: #66792]	Aminiphilus circumscriptus DSM 16581	1304874.3	wgs	PATRIC	1304874 tax ID	*
[Ref.: #66792]	Aminiphilus circumscriptus DSM 16581	2541046957	draft	JGI IMG/M	1304874 tax ID	*

[Ref.: #6515]	GC-content	52.7 mol%
[Ref.: #67770]	GC-content	52.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aminiphilus circumscriptus DSM 16581 PATRIC: 1304874.3
[Ref.: #69481]	spore-forming	no	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aminiphilus circumscriptus DSM 16581 PATRIC: 1304874.3
[Ref.: #69480]	motile	yes	87.187	yes
[Ref.: #69480]	gram-positive	no	98.711	no
[Ref.: #69480]	anaerobic	yes	99.999	yes
[Ref.: #69480]	halophile	no	93.978	yes
[Ref.: #69480]	spore-forming	no	88.398	yes
[Ref.: #69480]	thermophile	yes	90.491	no
[Ref.: #69480]	glucose-util	yes	74.598	no
[Ref.: #69480]	aerobic	no	98.888	yes
[Ref.: #69480]	flagellated	no	83.271	no
[Ref.: #69480]	glucose-ferment	no	55.271	no

Availability in culture collections External links

[Ref.: #6515]

Culture collection no.

DSM 16581, JCM 14039

[Ref.: #86773]

SI-ID 309424

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aminiphilus circumscriptus gen. nov., sp. nov., an anaerobic amino-acid-degrading bacterium from an upflow anaerobic sludge reactor.	Diaz C, Baena S, Fardeau ML, Patel BKC	Int J Syst Evol Microbiol	10.1099/ijs.0.63614-0	2007	*

References

#6515

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16581

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31459

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27760 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86773

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309424.1 )

#27760

IJSEM 1914 2007 ( DOI 10.1099/ijs.0.63614-0 , PubMed 17684281 )

* These data were automatically processed and therefore are not curated

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Aminiphilus circumscriptus DSM 16581

Aminiphilus circumscriptus DSM 16581

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