Fodinicola feengrottensis (DSM 19247, JCM 14718, HKI 0501)

Name: Fodinicola feengrottensis (DSM 19247, JCM 14718, HKI 0501)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17736

Type strain

Culture col. no. DSM 19247 JCM 14718 HKI 0501

NCBI tax ID(s) 435914

Special Collections DSMZ JCM Wink compendium Literature strains

History <- I. Groth; HKI 0501 I. Groth HKI 0501 (=strain 2427-001).

Links

Fodinicola feengrottensis DSM 19247 is an aerobe, Gram-positive bacterium that was isolated from rocks from a medieval alum slate mine.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400703

JCM 14718,DSM 19247

@ref 20215

Last LPSN update 2026-02-09 11:22:17

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Cryptosporangiales

Family Cryptosporangiaceae

Genus Fodinicola

Species Fodinicola feengrottensis

Full scientific name Fodinicola feengrottensis Carlsohn et al. 2008

BacDive ID	Other strains from **Fodinicola feengrottensis** (1)	Type strain
128702	F. feengrottensis STI43706(IMET), IMET 43706, NRRL 3382

Morphology

Cell morphology

@ref	Gram stain	Confidence
32447	positive
125439	positive	92.4
125438		95.5

Colony morphology

@ref	Colony color	Incubation period	Medium used
19777	Lemon yellow (1012)	10-14 days	ISP 2
19777	Lemon yellow (1012)	10-14 days	ISP 3
19777	Lemon yellow (1012)	10-14 days	ISP 4
19777	Ivory (1014)	10-14 days	ISP 5
19777	Lemon yellow (1012)	10-14 days	ISP 6
19777	Ivory (1014)	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19777		ISP 2
19777		ISP 3
19777		ISP 4
19777		ISP 5
19777		ISP 6
19777		ISP 7

Pigmentation

32447

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7906	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19777	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19777	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19777	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19777	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19777	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19777	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

Culture temp

@ref	Growth	Type	Temperature (°C)
7906	positive	growth	28
19777	positive	optimum	28
32447	positive	growth	10-32
32447	positive	optimum	24
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH
32447	positive	optimum	5.5
32447	positive	growth	05-07

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32447	aerobe
125439	obligate aerobe	97.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32447	NaCl	positive	growth	<1 %

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32447	22599 ChEBI	arabinose	+	carbon source
32447	4853 ChEBI	esculin	+	hydrolysis
32447	28757 ChEBI	fructose	+	carbon source
32447	17234 ChEBI	glucose	+	carbon source
32447	29864 ChEBI	mannitol	+	carbon source
32447	16634 ChEBI	raffinose	+	carbon source
32447	26546 ChEBI	rhamnose	+	carbon source
32447	17992 ChEBI	sucrose	+	carbon source
32447	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32447	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
32447	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
32447	alpha-galactosidase	+	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
32447	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
32447	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
32447	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19777	not determinedn.d.	+	+	+	+	+	+	+	-	-	+	+	-	+	+	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7906	rocks from a medieval alum slate mine	Thuringia	Germany	DEU	Europe
67770	Acidic and heavy metal-containing rocks in the 'Barbara Grotto' of the Feengrotten medieval alum slate mine	Saalfeld, Thuringia	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence EF490376 (>99% sequence identity) for Fodinicola feengrottensis subclade from Microbeatlas

Aquatic Samples	146
Soil Samples	2053
Animal Samples	120
Plant Samples	183
Total Samples	2502

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7906	1	Risk group (German classification) According to TRBA 466
19777	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3953004v1 assembly for Fodinicola feengrottensis JCM 14718	scaffold	GCA_039530045			435914	52.87
67770	ASM1099377v1 assembly for Fodinicola feengrottensis HKI 0501	contig	GCA_010993775	435914.3	2993950490	435914	25.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7906	Fodinicola feengrottensis strain HKI 0501 16S ribosomal RNA gene, partial sequence	EF490376	1441		435914

GC content

@ref	GC-content (mol%)	Method
7906	65
67770	65	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Fodinicola feengrottensis HKI 0501
NCBI: GCA_010993775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	59.60	no
125439	motility	BacteriaNetⓘ	no	77.50	no
125439	gram_stain	BacteriaNetⓘ	positive	92.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fodinicola feengrottensis strain HKI 0501
PATRIC: 435914.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.23	no
125438	anaerobic	anaerobicⓘ	no	93.81	yes
125438	spore-forming	spore-formingⓘ	yes	68.26	no
125438	thermophilic	thermophileⓘ	no	92.30	yes
125438	aerobic	aerobicⓘ	yes	86.87	no
125438	flagellated	motile2+ⓘ	no	95.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Exploring prokaryotic diversity in permafrost-affected soils of Ladakh's Changthang region and its geochemical drivers.	Ali A, Dolma P, Vishnivetskaya TA, Namgail T, Dolma T, Chauhan A.	Sci Rep	10.1038/s41598-025-94542-9	2025
	Different Influences of Bacterial Communities on Fe (III) Reduction and Phosphorus Availability in Sediments of the Cyanobacteria- and Macrophyte-Dominated Zones.	Fan X, Ding S, Gong M, Chen M, Gao S, Jin Z, Tsang DCW.	Front Microbiol	10.3389/fmicb.2018.02636	2018
Phylogeny	Fodinicola acaciae sp. nov., an Endophytic Actinomycete Isolated from the Roots of Acacia mangium Willd. and Its Genome Analysis.	Pham HTT, Suwannapan W, Koomsiri W, Inahashi Y, Take A, Matsumoto A, Thamchaipenet A	Microorganisms	10.3390/microorganisms8040467	2020
Phylogeny	Fodinicola feengrottensis gen. nov., sp. nov., an actinomycete isolated from a medieval mine.	Carlsohn MR, Groth I, Saluz HP, Schumann P, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.65512-0	2008

References

#7906	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19247
#19777	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28669	IJSEM 1529 2008 ( DOI 10.1099/ijs.0.65512-0 , PubMed 18599689 )
#32447	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28669
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Fodinicola feengrottensis (DSM 19247, JCM 14718, HKI 0501)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039530045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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