Name: Fodinicola feengrottensis DSM 19247
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17736

Type strain:

Species: Fodinicola feengrottensis

Culture col. no.: DSM 19247, JCM 14718, HKI 0501

Strain history: I. Groth HKI 0501 (=strain 2427-001).

NCBI tax ID(s): 435914 (species)

SI-ID 400703

DSM 19247

Special Collections

Other strains from Fodinicola feengrottensis

Section

Fodinicola feengrottensis DSM 19247 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from rocks from a medieval alum slate mine.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Cryptosporangiales*
	Family	*Cryptosporangiaceae*
	Genus	*Fodinicola*
	Species	**Fodinicola feengrottensis**
	Full Scientific Name (LPSN)	Fodinicola feengrottensis Carlsohn et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32447]	Gram stain	positive

[Ref.: #32447]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.5

[Ref.: #19777]	Colony color	Lemon yellow (1012)
[Ref.: #19777]	Incubation period	10-14 days
[Ref.: #19777]	Cultivation medium used	ISP 2

[Ref.: #19777]	Colony color	Lemon yellow (1012)
[Ref.: #19777]	Incubation period	10-14 days
[Ref.: #19777]	Cultivation medium used	ISP 3

[Ref.: #19777]	Colony color	Lemon yellow (1012)
[Ref.: #19777]	Incubation period	10-14 days
[Ref.: #19777]	Cultivation medium used	ISP 4

[Ref.: #19777]	Colony color	Ivory (1014)
[Ref.: #19777]	Incubation period	10-14 days
[Ref.: #19777]	Cultivation medium used	ISP 5

[Ref.: #19777]	Colony color	Lemon yellow (1012)
[Ref.: #19777]	Incubation period	10-14 days
[Ref.: #19777]	Cultivation medium used	ISP 6

[Ref.: #19777]	Colony color	Ivory (1014)
[Ref.: #19777]	Incubation period	10-14 days
[Ref.: #19777]	Cultivation medium used	ISP 7

[Ref.: #32447]

Pigment production

yes

[Ref.: #19777]	Multicellular complex forming ability	no
[Ref.: #19777]	Medium Name (multicellularity)	ISP 2

[Ref.: #19777]	Multicellular complex forming ability	no
[Ref.: #19777]	Medium Name (multicellularity)	ISP 3

[Ref.: #19777]	Multicellular complex forming ability	no
[Ref.: #19777]	Medium Name (multicellularity)	ISP 4

[Ref.: #19777]	Multicellular complex forming ability	no
[Ref.: #19777]	Medium Name (multicellularity)	ISP 5

[Ref.: #19777]	Multicellular complex forming ability	no
[Ref.: #19777]	Medium Name (multicellularity)	ISP 6

[Ref.: #19777]	Multicellular complex forming ability	no
[Ref.: #19777]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7906]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #7906]

Culture medium growth

[Ref.: #7906]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7906]

Culture medium composition

expand / minimize

[Ref.: #19777]

Culture medium

ISP 2

[Ref.: #19777]

Culture medium growth

[Ref.: #19777]

Culture medium composition

expand / minimize

[Ref.: #19777]

Culture medium

ISP 3

[Ref.: #19777]

Culture medium growth

[Ref.: #19777]

Culture medium composition

expand / minimize

[Ref.: #19777]

Culture medium

ISP 4

[Ref.: #19777]

Culture medium growth

[Ref.: #19777]

Culture medium composition

expand / minimize

[Ref.: #19777]

Culture medium

ISP 5

[Ref.: #19777]

Culture medium growth

[Ref.: #19777]

Culture medium composition

expand / minimize

[Ref.: #19777]

Culture medium

ISP 6

[Ref.: #19777]

Culture medium growth

[Ref.: #19777]

Culture medium composition

expand / minimize

[Ref.: #19777]

Culture medium

ISP 7

[Ref.: #19777]

Culture medium growth

[Ref.: #19777]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7906]	growth	28 °C
[Ref.: #19777]	optimum	28 °C
[Ref.: #32447]	growth	10-32 °C
[Ref.: #32447]	optimum	24 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #32447]			optimum	5.5
[Ref.: #32447]			growth	05-07

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32447]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32447]		NaCl		growth	<1	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32447]	arabinose ChEBI	+	carbon source
[Ref.: #32447]	esculin ChEBI	+	hydrolysis
[Ref.: #32447]	fructose ChEBI	+	carbon source
[Ref.: #32447]	glucose ChEBI	+	carbon source
[Ref.: #32447]	mannitol ChEBI	+	carbon source
[Ref.: #32447]	raffinose ChEBI	+	carbon source
[Ref.: #32447]	rhamnose ChEBI	+	carbon source
[Ref.: #32447]	sucrose ChEBI	+	carbon source
[Ref.: #32447]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32447]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32447]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #32447]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #32447]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32447]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #32447]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19777]	601	not determinedn.d.	+	+	+	+	+	+	+	-	-	+	+	-	+	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7906]	Sample type/isolated from	rocks from a medieval alum slate mine
[Ref.: #7906]	Geographic location (country and/or sea, region)	Thuringia
[Ref.: #7906]	Country	Germany
[Ref.: #7906]	Country ISO 3 Code	DEU
[Ref.: #7906]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Acidic and heavy metal-containing rocks in the 'Barbara Grotto' of the Feengrotten medieval alum slate mine
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saalfeld, Thuringia
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF490376 (>99% sequence identity) for Fodinicola feengrottensis subclade from Microbeatlas

Aquatic Samples	146
Soil Samples	2053
Animal Samples	120
Plant Samples	183
Total Samples	2502

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7906]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19777]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7906]	Fodinicola feengrottensis strain HKI 0501 16S ribosomal RNA gene, partial sequence	EF490376	1441	GenBank ENA	435914 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fodinicola feengrottensis HKI 0501	GCA_010993775	contig	GenBank ENA	435914 tax ID
[Ref.: #66792]	Fodinicola feengrottensis strain HKI 0501	435914.3	wgs	PATRIC	435914 tax ID	*

[Ref.: #7906]	GC-content	65 mol%
[Ref.: #67770]	GC-content	65 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fodinicola feengrottensis strain HKI 0501 PATRIC: 435914.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fodinicola feengrottensis strain HKI 0501 PATRIC: 435914.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.233	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.805	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	68.264	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.3	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.868	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95.5	no

Availability in culture collections External links

[Ref.: #7906]

Culture collection no.

DSM 19247, JCM 14718, HKI 0501

[Ref.: #86726]

SI-ID 400703

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fodinicola acaciae sp. nov., an Endophytic Actinomycete Isolated from the Roots of Acacia mangium Willd. and Its Genome Analysis.	Pham HTT, Suwannapan W, Koomsiri W, Inahashi Y, Take A, Matsumoto A, Thamchaipenet A	Microorganisms	10.3390/microorganisms8040467	2020	*
Phylogeny	Fodinicola feengrottensis gen. nov., sp. nov., an actinomycete isolated from a medieval mine.	Carlsohn MR, Groth I, Saluz HP, Schumann P, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.65512-0	2008	*

References

#7906

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19247

#19777

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32447

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28669 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86726

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400703.1 )

#28669

IJSEM 1529 2008 ( DOI 10.1099/ijs.0.65512-0 , PubMed 18599689 )

* These data were automatically processed and therefore are not curated

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Fodinicola feengrottensis strain HKI 0501

Fodinicola feengrottensis strain HKI 0501

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