Actinopolyspora halophila | Type strain | DSM 43834, ATCC 27976, IFO 14106, JCM 3278, KCC A-0278, NBRC 14106, NCIB 11472, BCRC 13403, CGMCC 4.1219, IMSNU 20045, IMSNU 21360, KCTC 9127, MTCC 263, NCIMB 11472, VKM Ac-871 | BacDiveID:17721

Strain identifier

BacDive ID: 17721

Type strain:

Species: Actinopolyspora halophila

Culture col. no.: DSM 43834, ATCC 27976, IFO 14106, JCM 3278, KCC A-0278, NBRC 14106, NCIB 11472, BCRC 13403, CGMCC 4.1219, IMSNU 20045, IMSNU 21360, KCTC 9127, MTCC 263, NCIMB 11472, VKM Ac-871

Strain history: KCC A-0278 <-- ATCC 27976 <-- T. J. Novitsky <-- M. Gochnauer.

NCBI tax ID(s): 1089546 (strain), 1850 (species)

SI-ID 39285

ATCC 27976, NCIB 11472, DSM 43834, IFO 14106, JCM 3278, CCRC 13403, NCIMB 11472, VKM Ac-871, KCTC 9127, NBRC 14106, BCRC 13403, CGMCC 4.1219

Section

Actinopolyspora halophila DSM 43834 is a spore-forming, mesophilic bacterium that was isolated from dairy salt.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinopolyspora*
	Species	**Actinopolyspora halophila**
	Full Scientific Name (LPSN)	Actinopolyspora halophila Gochnauer et al. 1975 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.024

[Ref.: #19602]	Multicellular complex forming ability	no
[Ref.: #19602]	Medium Name (multicellularity)	ISP 2

[Ref.: #19602]	Multicellular complex forming ability	no
[Ref.: #19602]	Medium Name (multicellularity)	ISP 3

[Ref.: #19602]	Multicellular complex forming ability	no
[Ref.: #19602]	Medium Name (multicellularity)	ISP 4

[Ref.: #19602]	Multicellular complex forming ability	no
[Ref.: #19602]	Medium Name (multicellularity)	ISP 5

[Ref.: #19602]	Multicellular complex forming ability	no
[Ref.: #19602]	Medium Name (multicellularity)	ISP 6

[Ref.: #19602]	Multicellular complex forming ability	no
[Ref.: #19602]	Medium Name (multicellularity)	ISP 7

Multimedia content

Intellectual property rights:

© Leibniz-Institut DSMZ

Caption:

Medium 549 37°C

Intellectual property rights:

© Leibniz-Institut DSMZ

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

CM + YE MEDIUM (DSMZ Medium 549)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11318]			growth	37 °C
[Ref.: #19602]			optimum	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #11318]	Temperature range	mesophilic
[Ref.: #19602]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19602]	Spore description	Formation of spores, spore surface smooth
[Ref.: #19602]	Type of spore	spore
[Ref.: #19602]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.655

Name of produced compound

ß-lactamase

Observation

quinones: MK-9(H₄), MK-9(H₄), MK-10(H₄)

	Enzymes	Enzyme	EC number
[Ref.: #67770]		beta-lactamase	3.5.2.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11318]	Sample type/isolated from	dairy salt

[Ref.: #67770]	Sample type/isolated from	Contaminant of complex medium for Halobacterium
[Ref.: #67770]	Host species	Halobacterium
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Dairy product

What are isolation sources categories?

Global distribution of 16S sequence X54287 (>99% sequence identity) for Actinopolyspora halophila from Microbeatlas

Aquatic Samples	4
Soil Samples	13
Animal Samples	20
Plant Samples
Total Samples	37

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11318]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19602]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	A.halophila partial 16S rRNA	X54287	1476	ENA	1850 tax ID	*
[Ref.: #20218]	A.halophila (JCM3278T) DNA for 16S-23S rRNA intergenic spacer	Z46603	271	ENA	1850 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinopolyspora halophila DSM 43834	GCA_000371785	contig	GenBank	1089546 tax ID
[Ref.: #66792]	Actinopolyspora halophila DSM 43834	1089546.3	wgs	PATRIC	1089546 tax ID	*
[Ref.: #66792]	Actinopolyspora halophila DSM 43834	2517287026	draft	JGI IMG/M	1089546 tax ID	*

[Ref.: #67770]	GC-content	68 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	68 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	64.2 mol%	fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinopolyspora halophila DSM 43834 PATRIC: 1089546.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinopolyspora halophila DSM 43834 PATRIC: 1089546.3
[Ref.: #69480]	motile	no	90.123	no
[Ref.: #69480]	flagellated	no	97.422	no
[Ref.: #69480]	gram-positive	yes	92.538	no
[Ref.: #69480]	anaerobic	no	98.879	no
[Ref.: #69480]	aerobic	yes	90.361	no
[Ref.: #69480]	halophile	yes	76.393	no
[Ref.: #69480]	spore-forming	yes	76.635	no
[Ref.: #69480]	glucose-util	yes	89.168	no
[Ref.: #69480]	thermophile	no	92.858	no
[Ref.: #69480]	glucose-ferment	no	89.15	no

Availability in culture collections External links

Culture collection no.

DSM 43834, ATCC 27976, IFO 14106, JCM 3278, KCC A-0278, NBRC 14106, NCIB 11472, BCRC 13403, CGMCC 4.1219, IMSNU 20045, IMSNU 21360, KCTC 9127, MTCC 263, NCIMB 11472, VKM Ac-871

SI-ID 39285

*

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Actinopolyspora biskrensis sp. nov., a novel halophilic actinomycete isolated from Northern Sahara.	Saker R, Bouras N, Meklat A, Zitouni A, Schumann P, Sproer C, Klenk HP, Sabaou N	Curr Microbiol	10.1007/s00284-014-0740-3	2014	*
Phylogeny	Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria.	Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N	Antonie Van Leeuwenhoek	10.1007/s10482-012-9859-z	2012	*
	Investigations on ideal mode of cell disruption in extremely halophilic Actinopolyspora halophila (MTCC 263) for efficient release of glycine betaine and trehalose.	Kar JR, Singhal RS	Biotechnol Rep (Amst)	10.1016/j.btre.2014.12.005	2014	*

References

#11318

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43834

#19602

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86712

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39285.1 )

* These data were automatically processed and therefore are not curated

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