Name: Youngiibacter multivorans PeC1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17676

Type strain:

Species: Youngiibacter multivorans

Strain Designation: PeC1

Culture col. no.: DSM 6139, ATCC 49731, JCM 19730

Strain history: DSM 6139 <-- K. Tanaka PeC1.

NCBI tax ID(s): 937251 (species)

SI-ID 48112

DSM 6139, ATCC 49731, JCM 19730

Section

Youngiibacter multivorans PeC1 is an anaerobe, mesophilic bacterium that was isolated from anoxic sludge, oil refinery waste water treatment facility.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Youngiibacter*
	Species	**Youngiibacter multivorans**
	Full Scientific Name (LPSN)	Youngiibacter multivorans (Tanaka et al. 1992) Lawson et al. 2014

Synonym

Acetivibrio multivorans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2502]

Culture medium

FORMIVIBRIO MEDIUM (DSMZ Medium 505)

[Ref.: #2502]

Culture medium growth

[Ref.: #2502]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2502]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2502]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #2502]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2502]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.822

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.609

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2502]	Sample type/isolated from	anoxic sludge, oil refinery waste water treatment facility
[Ref.: #2502]	Geographic location (country and/or sea, region)	Yokohama
[Ref.: #2502]	Country	Japan
[Ref.: #2502]	Country ISO 3 Code	JPN
[Ref.: #2502]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Anoxic sludge of an oil refinery wastewater treatment facility
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	-
#Engineered	#Waste	#Industrial wastewater
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2502]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2502]	Acetivibrio multivorans partial 16S rRNA gene, type strain DSM 6139T	FR749900	1460	ENA	937251 tax ID
[Ref.: #67770]	Youngiibacter multivorans gene for 16S ribosomal RNA, partial sequence	AB910755	1470	ENA	937251 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Youngiibacter multivorans DSM 6139	GCA_017873395	contig	GenBank	937251 tax ID	*
[Ref.: #66792]	Youngiibacter multivorans strain DSM 6139	937251.3	wgs	PATRIC	937251 tax ID	*
[Ref.: #66792]	Acetivibrio multivorans DSM 6139	2913345020	draft	JGI IMG/M	937251 tax ID	*

[Ref.: #2502]	GC-content	44.0 mol%
[Ref.: #67770]	GC-content	44 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Youngiibacter multivorans strain DSM 6139 PATRIC: 937251.3
[Ref.: #69481]	spore-forming	no	86	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Youngiibacter multivorans strain DSM 6139 PATRIC: 937251.3
[Ref.: #69480]	motile	no	88.651	no
[Ref.: #69480]	flagellated	no	89.285	no
[Ref.: #69480]	gram-positive	yes	76.179	no
[Ref.: #69480]	anaerobic	yes	98.236	yes
[Ref.: #69480]	halophile	no	84.234	no
[Ref.: #69480]	spore-forming	no	73.112	no
[Ref.: #69480]	glucose-util	yes	89.404	no
[Ref.: #69480]	aerobic	no	96.473	yes
[Ref.: #69480]	thermophile	no	82.916	yes
[Ref.: #69480]	glucose-ferment	yes	58.194	no

Availability in culture collections External links

[Ref.: #2502]

Culture collection no.

DSM 6139, ATCC 49731, JCM 19730

[Ref.: #86667]

SI-ID 48112

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteiniclasticum aestuarii sp. nov., isolated from tidal flat sediment, and emended descriptions of the genus Proteiniclasticum and Proteiniclasticum ruminis.	Namirimu T, Yang JA, Yang SH, Yu J, Kim YJ, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijsem.0.005275	2022	*
Phylogeny	Youngiibacter fragilis gen. nov., sp. nov., isolated from natural gas production-water and reclassification of Acetivibrio multivorans as Youngiibacter multivorans comb. nov.	Lawson PA, Wawrik B, Allen TD, Johnson CN, Marks CR, Tanner RS, Harriman BH, Strapoc D, Callaghan AV	Int J Syst Evol Microbiol	10.1099/ijs.0.053728-0	2013	*

References

#2502

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6139

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86667

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48112.1 )

* These data were automatically processed and therefore are not curated

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Youngiibacter multivorans strain DSM 6139

Youngiibacter multivorans strain DSM 6139

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