Youngiibacter multivorans (DSM 6139, ATCC 49731, JCM 19730)

Name: Youngiibacter multivorans (DSM 6139, ATCC 49731, JCM 19730)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17676

Type strain

Strain Designation PeC1

Culture col. no. DSM 6139 ATCC 49731 JCM 19730 PeC1

NCBI tax ID(s) 937251

Special Collections DSMZ JCM

History DSMZ <- K. Tanaka; PeC1 <- K. Tanaka {1989} JCM <-- DSM 6139 <-- K. Tanaka PeC1.

Links

Youngiibacter multivorans PeC1 is an anaerobe bacterium that was isolated from anoxic sludge, oil refinery waste water treatment facility.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 48112

DSM 6139,ATCC 49731,JCM 19730

@ref 20215

Last LPSN update 2026-05-29 08:29:04

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Youngiibacter

Species Youngiibacter multivorans

Full scientific name Youngiibacter multivorans (Tanaka et al. 1992) Lawson et al. 2014

Synonyms (1)

Acetivibrio multivorans

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2502	FORMIVIBRIO MEDIUM (DSMZ Medium 505)		Medium recipe at MediaDive	Name: FORMIVIBRIO MEDIUM (DSMZ Medium 505; with strain-specific modifications) Composition: None 1.69492 g/l Na2CO3 1.49551 g/l KH2PO4 1.39581 g/l NH4Cl 0.498505 g/l Na2S x 9 H2O 0.299103 g/l MgCl2 x 6 H2O 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l Yeast extract 0.0498504 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2502	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
2502	anaerobe
125439	obligate anaerobe	98.188

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	-
#Engineered	#Waste	#Industrial wastewater
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2502	anoxic sludge, oil refinery waste water treatment facility	Yokohama	Japan	JPN	Asia
67770	Anoxic sludge of an oil refinery wastewater treatment facility

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2502	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1787339v1 assembly for Youngiibacter multivorans DSM 6139	contig	GCA_017873395	937251.3	2913345020	937251	56.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
2502	Acetivibrio multivorans partial 16S rRNA gene, type strain DSM 6139T	FR749900	1460		937251
67770	Youngiibacter multivorans gene for 16S ribosomal RNA, partial sequence	AB910755	1470		937251

GC content

@ref	GC-content (mol%)	Method
2502	44.0
67770	44	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1787339v1 assembly for Youngiibacter multivorans DSM 6139
NCBI: GCA_017873395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.19	no
125439	gram_stain	BacteriaNetⓘ	variable	68.05	no
125439	spore_formation	BacteriaNetⓘ	yes	64.84	no
125439	motility	BacteriaNetⓘ	yes	74.31	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Youngiibacter multivorans strain DSM 6139
PATRIC: 937251.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	69.88	no
125438	anaerobic	anaerobicⓘ	yes	77.46	no
125438	aerobic	aerobicⓘ	no	90.27	yes
125438	spore-forming	spore-formingⓘ	yes	51.78	no
125438	thermophilic	thermophileⓘ	no	89.68	no
125438	flagellated	motile2+ⓘ	no	67.92	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteiniclasticum aestuarii sp. nov., isolated from tidal flat sediment, and emended descriptions of the genus Proteiniclasticum and Proteiniclasticum ruminis.	Namirimu T, Yang JA, Yang SH, Yu J, Kim YJ, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijsem.0.005275	2022
Phylogeny	Youngiibacter fragilis gen. nov., sp. nov., isolated from natural gas production-water and reclassification of Acetivibrio multivorans as Youngiibacter multivorans comb. nov.	Lawson PA, Wawrik B, Allen TD, Johnson CN, Marks CR, Tanner RS, Harriman BH, Strapoc D, Callaghan AV	Int J Syst Evol Microbiol	10.1099/ijs.0.053728-0	2013

References

#2502	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6139
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Youngiibacter multivorans (DSM 6139, ATCC 49731, JCM 19730)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017873395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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