Name: Cohaesibacter gelatinilyticus CL-GR15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17664

Type strain:

Species: Cohaesibacter gelatinilyticus

Strain Designation: CL-GR15

Culture col. no.: DSM 18289, KCCM 42319

Strain history: <- B. C. Cho, Seoul Nat. Univ.; CL-GR15

NCBI tax ID(s): 372072 (species)

SI-ID 403765

DSM 18289

Section

Cohaesibacter gelatinilyticus CL-GR15 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from surface of coastal seawater.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Cohaesibacteraceae*
	Genus	*Cohaesibacter*
	Species	**Cohaesibacter gelatinilyticus**
	Full Scientific Name (LPSN)	Cohaesibacter gelatinilyticus Hwang and Cho 2008

Information on morphological and physiological properties Morphology

[Ref.: #32130]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #32130]	Cell length	2 µm

[Ref.: #32130]	Cell width	0.3 µm

[Ref.: #32130]	Cell shape	rod-shaped

[Ref.: #32130]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.825

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7485]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7485]

Culture medium growth

[Ref.: #7485]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7485]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7485]	growth	25-30 °C
[Ref.: #32130]	growth	15-31 °C
[Ref.: #32130]	optimum	27.5 °C

[Ref.: #7485]	Temperature range	mesophilic
[Ref.: #32130]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32130]			optimum	8
[Ref.: #32130]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32130]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32130]		NaCl		growth	02-05	%
[Ref.: #32130]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32130]	acetate ChEBI	+	carbon source
[Ref.: #32130]	arginine ChEBI	+	carbon source
[Ref.: #32130]	asparagine ChEBI	+	carbon source
[Ref.: #32130]	citrate ChEBI	+	carbon source
[Ref.: #32130]	esculin ChEBI	+	hydrolysis
[Ref.: #32130]	fructose ChEBI	+	carbon source
[Ref.: #32130]	glucose ChEBI	+	carbon source
[Ref.: #32130]	glutamate ChEBI	+	carbon source
[Ref.: #32130]	glycerol ChEBI	+	carbon source
[Ref.: #32130]	glycogen ChEBI	+	carbon source
[Ref.: #32130]	mannitol ChEBI	+	carbon source
[Ref.: #32130]	mannose ChEBI	+	carbon source
[Ref.: #32130]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32130]	ornithine ChEBI	+	carbon source
[Ref.: #32130]	proline ChEBI	+	carbon source
[Ref.: #32130]	pyruvate ChEBI	+	carbon source
[Ref.: #32130]	ribose ChEBI	+	carbon source
[Ref.: #32130]	sorbitol ChEBI	+	carbon source
[Ref.: #32130]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32130]	acid phosphatase	+	3.1.3.2
[Ref.: #32130]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32130]	catalase	+	1.11.1.6
[Ref.: #32130]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32130]	gelatinase	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	myo-inositol biosynthesis	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	purine metabolism	79.79	75 of 94
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	lysine metabolism	76.19	32 of 42
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	phenol degradation	75	15 of 20
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	4-hydroxyphenylacetate degradation	70	7 of 10
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	oxidative phosphorylation	65.93	60 of 91
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	polyamine pathway	65.22	15 of 23
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	degradation of pentoses	53.57	15 of 28
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	arachidonic acid metabolism	50	9 of 18
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methanogenesis from CO2	33.33	4 of 12
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	chlorophyll metabolism	33.33	6 of 18
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7485]	Sample type/isolated from	surface of coastal seawater
[Ref.: #7485]	Geographic location (country and/or sea, region)	east coast of Korea, Gori-gun, Busan
[Ref.: #7485]	Country	Republic of Korea
[Ref.: #7485]	Country ISO 3 Code	KOR
[Ref.: #7485]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ386307 (>99% sequence identity) for Cohaesibacter gelatinilyticus subclade from Microbeatlas

Aquatic Samples	437
Soil Samples	3
Animal Samples	51
Plant Samples	1
Total Samples	492

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7485]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7485]	Cohaesibacter gelatinilyticus strain CL-GR15 16S ribosomal RNA gene, partial sequence	DQ386307	1374	ENA	372072 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cohaesibacter gelatinilyticus DSM 18289	GCA_900215605	scaffold	GenBank	372072 tax ID	*
[Ref.: #66792]	Cohaesibacter gelatinilyticus strain DSM 18289	372072.6	wgs	PATRIC	372072 tax ID	*
[Ref.: #66792]	Cohaesibacter gelatinilyticus DSM 18289	2728369261	draft	JGI IMG/M	372072 tax ID	*

[Ref.: #7485]	GC-content	52.8-53.0 mol%
[Ref.: #32130]	GC-content	52.8-53 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cohaesibacter gelatinilyticus DSM 18289 NCBI: GCA_900215605.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cohaesibacter gelatinilyticus DSM 18289 NCBI: GCA_900215605.1
[Ref.: #69480]	flagellated	yes	71.111	no
[Ref.: #69480]	gram-positive	no	98.79	no
[Ref.: #69480]	anaerobic	no	98.003	yes
[Ref.: #69480]	aerobic	yes	80.447	no
[Ref.: #69480]	halophile	no	56.513	no
[Ref.: #69480]	spore-forming	no	96.329	no
[Ref.: #69480]	thermophile	no	98.469	yes
[Ref.: #69480]	glucose-util	yes	85.912	yes
[Ref.: #69480]	motile	yes	93.611	yes
[Ref.: #69480]	glucose-ferment	no	90.578	no

Availability in culture collections External links

[Ref.: #7485]

Culture collection no.

DSM 18289, KCCM 42319

[Ref.: #86655]

SI-ID 403765

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cohaesibacter intestini sp. nov., isolated from the intestine of abalone, Haliotis discus hannai.	Liu M, Huang Z, Zhao Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.003610	2019	*
Phylogeny	Cohaesibacter haloalkalitolerans sp. nov., isolated from a soda lake, and emended description of the genus Cohaesibacter.	Sultanpuram VR, Lodha TD, Chintalapati VR, Chintalapati S	Int J Syst Evol Microbiol	10.1099/ijs.0.050112-0	2013	*
Phylogeny	Breoghania corrubedonensis gen. nov. sp. nov., a novel alphaproteobacterium isolated from a Galician beach (NW Spain) after the Prestige fuel oil spill, and emended description of the family Cohaesibacteraceae and the species Cohaesibacter gelatinilyticus.	Gallego S, Vila J, Maria Nieto J, Urdiain M, Rossello-Mora R, Grifoll M	Syst Appl Microbiol	10.1016/j.syapm.2010.06.005	2010	*
Phylogeny	Cohaesibacter marisflavi sp. nov., isolated from sediment of a seawater pond used for sea cucumber culture, and emended description of the genus Cohaesibacter.	Qu L, Lai Q, Zhu F, Hong X, Sun X, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.021972-0	2010	*
Phylogeny	Cohaesibacter gelatinilyticus gen. nov., sp. nov., a marine bacterium that forms a distinct branch in the order Rhizobiales, and proposal of Cohaesibacteraceae fam. nov.	Hwang CY, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.65016-0	2008	*

References

#7485

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18289

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32130

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28374 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86655

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403765.1 )

#28374

IJSEM 267 2008 ( DOI 10.1099/ijs.0.65016-0 , PubMed 18175720 )

* These data were automatically processed and therefore are not curated

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Cohaesibacter gelatinilyticus DSM 18289

Cohaesibacter gelatinilyticus DSM 18289

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