Name: Desulfurobacterium pacificum SL17
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17644

Type strain:

Species: Desulfurobacterium pacificum

Strain Designation: SL17

Culture col. no.: DSM 15522, JCM 12127

Strain history: S. L'Haridon SL17.

NCBI tax ID(s): 1121473 (strain), 240166 (species)

SI-ID 297159

DSM 15522, JCM 12127

Special Collections

DSMZ
JCM

Section

Desulfurobacterium pacificum SL17 is an anaerobe bacterium that was isolated from deep-sea hydrothermal vent chimney.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Desulfurobacteriales*
	Family	*Desulfurobacteriaceae*
	Genus	*Desulfurobacterium*
	Species	**Desulfurobacterium pacificum**
	Full Scientific Name (LPSN)	Desulfurobacterium pacificum L'Haridon et al. 2006

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5978]

Culture medium

DESULFUROBACTERIUM CRINIFEX MEDIUM (DSMZ Medium 829c)

[Ref.: #5978]

Culture medium growth

[Ref.: #5978]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5978]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5978]			growth	75 °C
[Ref.: #67770]			growth	75 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5978]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5978]	Sample type/isolated from	deep-sea hydrothermal vent chimney
[Ref.: #5978]	Geographic location (country and/or sea, region)	East Pacific Rise, 13°N
[Ref.: #5978]	Geographic location	13.0000°/-103.5680°

[Ref.: #67770]	Sample type/isolated from	Deep-sea hydrothermal vent chimney at the East Pacific Rise
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY268936 (>99% sequence identity) for Desulfurobacterium pacificum subclade from Microbeatlas

Aquatic Samples	28
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	29

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5978]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5978]	Desulfurobacterium pacificum strain SL17 16S ribosomal RNA gene, partial sequence	AY268936	1506	GenBank ENA	240166 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfurobacterium pacificum DSM 15522	2724679812	draft	JGI IMG/M	240166 tax ID	*

[Ref.: #5978]

GC-content

42 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5978]

Culture collection no.

DSM 15522, JCM 12127

[Ref.: #86635]

SI-ID 297159

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfurobacterium atlanticum sp. nov., Desulfurobacterium pacificum sp. nov. and Thermovibrio guaymasensis sp. nov., three thermophilic members of the Desulfurobacteriaceae fam. nov., a deep branching lineage within the Bacteria.	L'Haridon S, Reysenbach AL, Tindall BJ, Schonheit P, Banta A, Johnsen U, Schumann P, Gambacorta A, Stackebrandt E, Jeanthon C	Int J Syst Evol Microbiol	10.1099/ijs.0.63994-0	2006	*

References

#5978

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15522

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86635

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297159.1 )

* These data were automatically processed and therefore are not curated

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