Name: Xanthomonas euvesicatoria XV938
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17614

Type strain:

Species: Xanthomonas euvesicatoria

Strain Designation: XV938

Culture col. no.: DSM 18975, NCPPB 4321, CFBP 7293

Strain history: <- NCPPB <- ?

NCBI tax ID(s): 442694 (species)

SI-ID 291139

ATCC BAA-983, NCPPB 4321, DSM 18975, ICMP 16690, LMG 28258, CFBP 7293

Special Collections

DSMZ

Other strains from Xanthomonas euvesicatoria

Section

Xanthomonas euvesicatoria XV938 is a Gram-negative plant pathogen that was isolated from Lycopersicon esculentum.

Gram-negative
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xanthomonas*
	Species	**Xanthomonas euvesicatoria**
	Full Scientific Name (LPSN)	Xanthomonas euvesicatoria Jones et al. 2006

	Synonym	Xanthomonas alfalfae
	Synonym	Xanthomonas perforans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.469

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7808]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #7808]

Culture medium growth

[Ref.: #7808]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7808]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7808]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7808]	Sample type/isolated from	Lycopersicon esculentum
[Ref.: #7808]	Host species	Lycopersicon esculentum
[Ref.: #7808]	Country	USA
[Ref.: #7808]	Country ISO 3 Code	USA
[Ref.: #7808]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR749910 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7808]	Pathogenicity (plant)	yes
[Ref.: #7808]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Xanthomonas perforans partial 16S rRNA gene, type strain DSM 18975T	FR749910	1534	GenBank ENA	442694 tax ID	*
[Ref.: #20218]	Xanthomonas perforans clone K0868 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence	HM181883	558	GenBank ENA	442694 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xanthomonas perforans DSM 18975	GCA_013112235	contig	GenBank ENA	442694 tax ID	*
[Ref.: #66792]	Xanthomonas perforans CFBP 7293	GCA_001976075	contig	GenBank ENA	442694 tax ID	*
[Ref.: #66792]	Xanthomonas perforans strain CFBP 7293	442694.64	wgs	PATRIC	442694 tax ID	*
[Ref.: #66792]	Xanthomonas perforans strain DSM 18975	442694.367	wgs	PATRIC	442694 tax ID	*
[Ref.: #66792]	Xanthomonas perforans CFBP 7293	2878115805	draft	JGI IMG/M	442694 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xanthomonas perforans strain CFBP 7293 PATRIC: 442694.64
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.469	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.817	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.901	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.032	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.91	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.214	no

Availability in culture collections External links

[Ref.: #7808]

Culture collection no.

DSM 18975, NCPPB 4321, CFBP 7293

[Ref.: #86607]

SI-ID 291139

References

#7808

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18975

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86607

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291139.1 )

* These data were automatically processed and therefore are not curated

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Xanthomonas perforans strain CFBP 7293

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