Xanthomonas euvesicatoria (DSM 18975, NCPPB 4321, XV938)

Name: Xanthomonas euvesicatoria (DSM 18975, NCPPB 4321, XV938)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17614

Type strain

Strain Designation XV938

Culture col. no. DSM 18975 NCPPB 4321 XV938 CFBP 7293

NCBI tax ID(s) 442694

Special Collections DSMZ

History <- NCPPB <- ?

Links

Xanthomonas euvesicatoria XV938 is a plant pathogen that was isolated from Lycopersicon esculentum.

plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 291139

NBIMCC 8729,ATCC BAA-983,NCPPB 4321,DSM 18975,ICMP 16690,LMG 28258,CFBP 7293

@ref 20215

Last LPSN update 2026-02-09 11:22:16

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas euvesicatoria

Full scientific name Xanthomonas euvesicatoria Jones et al. 2006

Synonyms (2)

Xanthomonas perforans
Xanthomonas alfalfae

BacDive ID	Other strains from **Xanthomonas euvesicatoria** (1)	Type strain
17613	X. euvesicatoria DSM 19128, ATCC 11633, LMG 27970, NCPPB 2968, ... (type strain)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1
125438	negative	98.469

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7808	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7808	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.8

Spore formation

@ref	Spore formation	Confidence
125439		97.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7808	Lycopersicon esculentum	Lycopersicon esculentum	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence FR749910 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
7808		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1311223v1 assembly for Xanthomonas perforans DSM 18975	contig	GCA_013112235	442694.367	8116637252	442694	79.06
66792	ASM197607v1 assembly for Xanthomonas perforans CFBP 7293	contig	GCA_001976075	442694.64	2878115805	442694	73.33

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Xanthomonas perforans partial 16S rRNA gene, type strain DSM 18975T	FR749910	1534	442694
124043	Xanthomonas perforans strain NCPPB 4321 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence.	KP033422	687	442694
124043	Xanthomonas perforans strain NCPPB 4321 16S ribosomal RNA gene, partial sequence.	KU301893	1378	442694

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Xanthomonas perforans DSM 18975
NCBI: GCA_013112235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.20	no
125439	motility	BacteriaNetⓘ	yes	83.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Xanthomonas perforans strain CFBP 7293
PATRIC: 442694.64

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.47	no
125438	anaerobic	anaerobicⓘ	no	97.82	no
125438	spore-forming	spore-formingⓘ	no	88.90	no
125438	aerobic	aerobicⓘ	yes	87.03	no
125438	thermophilic	thermophileⓘ	no	99.91	yes
125438	flagellated	motile2+ⓘ	yes	71.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genomes announcement of Vietnamese Xanthomonas euvesicatoria strains causing bacterial spot on pepper.	Subedi A, Nga NTT, Tien DTK, Minsavage GV, Roberts PD, Goss EM, Jones JB.	Access Microbiol	10.1099/acmi.0.000741.v3	2024
	Sub-species diversity of Xanthomonas euvesicatoria Bulgarian and Macedonian strains from pepper.	Vancheva T, Stoyanova M, Tatyozova M, Bogatzevska N, Moncheva P.	Biotechnol Biotechnol Equip	10.1080/13102818.2014.947722	2014
Enzymology	Molecular methods for diversity assessment among xanthomonads of Bulgarian and Macedonian pepper.	Vancheva T, Stoyanova M, Tasheva-Terzieva E, Bogatzevska N, Moncheva P.	Braz J Microbiol	10.1016/j.bjm.2017.08.011	2018
Genetics	Genomic insights and biocontrol potential of ten bacterial strains from the tomato core microbiome.	Nicotra D, Ghadamgahi F, Ghosh S, Anzalone A, Dimaria G, Mosca A, Massimino ME, Vetukuri RR, Catara V.	Front Plant Sci	10.3389/fpls.2024.1437947	2024
Phylogeny	Analysis of Italian isolates of Pantoea stewartii subsp. stewartii and development of a real-time PCR-based diagnostic method.	Scala V, Faino L, Costantini F, Crosara V, Albanese A, Pucci N, Reverberi M, Loreti S.	Front Microbiol	10.3389/fmicb.2023.1129229	2023
Genetics	Isolation, Characterization and Draft Genome Analysis of Bacteriophages Infecting Acidovorax citrulli.	Gasic K, Obradovic M, Kuzmanovic N, Zlatkovic N, Ivanovic M, Ristic D, Obradovic A.	Front Microbiol	10.3389/fmicb.2021.803789	2021
Enzymology	Evolutionary and experimental assessment of novel markers for detection of Xanthomonas euvesicatoria in plant samples.	Albuquerque P, Caridade CM, Rodrigues AS, Marcal AR, Cruz J, Cruz L, Santos CL, Mendes MV, Tavares F.	PLoS One	10.1371/journal.pone.0037836	2012
Genetics	Complete genome sequence of Xanthomonas euvesicatoria pv. polysciadis pathotype strain Pgu1^PT, a phytopathogenic bacterium isolated from Polyscias guilfoylei (geranium aralia).	Wu C-F, Lee S, Huang Y-C, Chu C-C.	Microbiol Resour Announc	10.1128/mra.00240-25	2025
	Xanthomonas spp. Infecting Araceae and Araliaceae: Taxonomy, Phylogeny, and Potential Virulence Mechanisms.	Chuang SC, Dobhal S, Keith LM, Alvarez AM, Arif M.	Biology (Basel)	10.3390/biology14070766	2025
Genetics	Microbial Diversity Analysis and Genome Sequencing Identify Xanthomonas perforans as the Pathogen of Bacterial Leaf Canker of Water Spinach (Ipomoea aquatic).	Hu M, Li C, Zhou X, Xue Y, Wang S, Hu A, Chen S, Mo X, Zhou J.	Front Microbiol	10.3389/fmicb.2021.752760	2021

References

#7808	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18975
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Xanthomonas euvesicatoria (DSM 18975, NCPPB 4321, XV938)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013112235

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media