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Strain identifier

BacDive ID: 17614

Type strain: Yes

Species: Xanthomonas perforans

Strain Designation: XV938

Strain history: <- NCPPB <- ?

NCBI tax ID(s): 442694 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7808

BacDive-ID: 17614

DSM-Number: 18975

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas perforans XV938 is a mesophilic plant pathogen that was isolated from Lycopersicon esculentum.

NCBI tax id

  • NCBI tax id: 442694
  • Matching level: species

strain history: <- NCPPB <- ?

doi: 10.13145/bacdive17614.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas perforans
  • full scientific name: Xanthomonas perforans Jones et al. 2006

@ref: 7808

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas perforans

full scientific name: Xanthomonas perforans Jones et al. 2006

strain designation: XV938

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes60.399
6948099.166negative

Culture and growth conditions

culture medium

  • @ref: 7808
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 7808
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.485

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.839

Isolation, sampling and environmental information

isolation

  • @ref: 7808
  • sample type: Lycopersicon esculentum
  • host species: Lycopersicon esculentum
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: FR749910
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Safety information

risk assessment

  • @ref: 7808
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Xanthomonas perforans partial 16S rRNA gene, type strain DSM 18975TFR7499101534ena442694
20218Xanthomonas perforans clone K0868 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequenceHM181883558ena442694

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas perforans DSM 18975GCA_013112235contigncbi442694
66792Xanthomonas perforans CFBP 7293GCA_001976075contigncbi442694
66792Xanthomonas perforans strain CFBP 7293442694.64wgspatric442694
66792Xanthomonas perforans strain DSM 18975442694.367wgspatric442694
66792Xanthomonas perforans CFBP 72932878115805draftimg442694

External links

@ref: 7808

culture collection no.: DSM 18975, NCPPB 4321, CFBP 7293

straininfo link

@refpassport
20218http://www.straininfo.net/strains/701877
20218http://www.straininfo.net/strains/677779

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7808Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18975)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18975
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)