Strain identifier
BacDive ID: 17614
Type strain: 
Species: Xanthomonas perforans
Strain Designation: XV938
Strain history: <- NCPPB <- ?
NCBI tax ID(s): 442694 (species)
version 7.1 (current version)
General
@ref: 7808
BacDive-ID: 17614
DSM-Number: 18975
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen
description: Xanthomonas perforans XV938 is a mesophilic plant pathogen that was isolated from Lycopersicon esculentum.
NCBI tax id
- NCBI tax id: 442694
- Matching level: species
strain history: <- NCPPB <- ?
doi: 10.13145/bacdive17614.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas perforans
- full scientific name: Xanthomonas perforans Jones et al. 2006
@ref: 7808
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas perforans
full scientific name: Xanthomonas perforans Jones et al. 2006
strain designation: XV938
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 60.399 | |
| 69480 | 99.166 | negative |
Culture and growth conditions
culture medium
- @ref: 7808
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 7808
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.485
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 97.839
Isolation, sampling and environmental information
isolation
- @ref: 7808
- sample type: Lycopersicon esculentum
- host species: Lycopersicon esculentum
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_92.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
- Last taxonomy: Xanthomonas
- 16S sequence: FR749910
- Sequence Identity:
- Total samples: 52152
- soil counts: 10026
- aquatic counts: 6826
- animal counts: 28252
- plant counts: 7048
Safety information
risk assessment
- @ref: 7808
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Xanthomonas perforans partial 16S rRNA gene, type strain DSM 18975T | FR749910 | 1534 | ena | 442694 |
| 20218 | Xanthomonas perforans clone K0868 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence | HM181883 | 558 | ena | 442694 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Xanthomonas perforans DSM 18975 | GCA_013112235 | contig | ncbi | 442694 |
| 66792 | Xanthomonas perforans CFBP 7293 | GCA_001976075 | contig | ncbi | 442694 |
| 66792 | Xanthomonas perforans strain CFBP 7293 | 442694.64 | wgs | patric | 442694 |
| 66792 | Xanthomonas perforans strain DSM 18975 | 442694.367 | wgs | patric | 442694 |
| 66792 | Xanthomonas perforans CFBP 7293 | 2878115805 | draft | img | 442694 |
External links
@ref: 7808
culture collection no.: DSM 18975, NCPPB 4321, CFBP 7293
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/701877 |
| 20218 | http://www.straininfo.net/strains/677779 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7808 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18975) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18975 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |