Name: Rhodanobacter umsongensis GR24-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17521

Type strain:

Species: Rhodanobacter umsongensis

Strain Designation: GR24-2

Culture col. no.: DSM 21300, CCM 7935, KACC 12917

Strain history: <- S.-W. Kwon, KACC <- H.-Y. Weon

NCBI tax ID(s): 633153 (species)

SI-ID 401885

DSM 21300

Section

Rhodanobacter umsongensis GR24-2 is a mesophilic bacterium that was isolated from soil of ginseng field.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Rhodanobacter*
	Species	**Rhodanobacter umsongensis**
	Full Scientific Name (LPSN)	Rhodanobacter umsongensis Kim et al. 2013

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15432]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15432]

Culture medium growth

[Ref.: #15432]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15432]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15432]			growth	28 °C

[Ref.: #15432]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15432]	Sample type/isolated from	soil of ginseng field
[Ref.: #15432]	Geographic location (country and/or sea, region)	Umsong province (36°56' N 127° 44' E)
[Ref.: #15432]	Country	Republic of Korea
[Ref.: #15432]	Country ISO 3 Code	KOR
[Ref.: #15432]	Continent	Asia
[Ref.: #15432]	Geographic location	36.9333°/127.7330°
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ821731 (>99% sequence identity) for Rhodanobacter from Microbeatlas

Aquatic Samples	1845
Soil Samples	9043
Animal Samples	1438
Plant Samples	2215
Total Samples	14541

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15432]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15432]	Rhodanobacter umsongensis strain GR24-2 16S ribosomal RNA gene, partial sequence	FJ821731	1477	ENA	633153 tax ID

[Ref.: #15432]

GC-content

64.0 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15432]

Culture collection no.

DSM 21300, CCM 7935, KACC 12917

[Ref.: #86518]

SI-ID 401885

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodanobacter hydrolyticus sp. nov., a novel DNA- and tyrosine-hydrolysing gammaproteobacterium isolated from forest soil.	Dahal RH, Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002881	2018	*
Phylogeny	Rhodanobacter koreensis sp. nov., a bacterium isolated from tomato rhizosphere.	Won K, Singh H, Ngo HTT, Son H, Kook M, Kim KY, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000077	2015	*
Phylogeny	Rhodanobacter umsongensis sp. nov., isolated from a Korean ginseng field.	Kim YS, Kim SJ, Anandham R, Weon HY, Kwon SW	J Microbiol	10.1007/s12275-013-2516-z	2013	*

References

#15432

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21300

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86518

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401885.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhodanobacter umsongensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF