Strain identifier
BacDive ID: 17521
Type strain: 
Species: Rhodanobacter umsongensis
Strain Designation: GR24-2
Strain history: <- S.-W. Kwon, KACC <- H.-Y. Weon
NCBI tax ID(s): 633153 (species)
version 8.1 (current version)
General
@ref: 15432
BacDive-ID: 17521
DSM-Number: 21300
keywords: 16S sequence, Bacteria, mesophilic
description: Rhodanobacter umsongensis GR24-2 is a mesophilic bacterium that was isolated from soil of ginseng field.
NCBI tax id
- NCBI tax id: 633153
- Matching level: species
strain history
- @ref: 15432
- history: <- S.-W. Kwon, KACC <- H.-Y. Weon
doi: 10.13145/bacdive17521.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Rhodanobacteraceae
- genus: Rhodanobacter
- species: Rhodanobacter umsongensis
- full scientific name: Rhodanobacter umsongensis Kim et al. 2013
@ref: 15432
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Rhodanobacteraceae
genus: Rhodanobacter
species: Rhodanobacter umsongensis
full scientific name: Rhodanobacter umsongensis Kim et al. 2013
strain designation: GR24-2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 15432
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 15432
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 15432
- sample type: soil of ginseng field
- geographic location: Umsong province (36°56' N 127° 44' E)
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
- latitude: 36.9333
- longitude: 127.733
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_4044.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_114;96_316;97_413;98_2258;99_4044&stattab=map
- Last taxonomy: Rhodanobacter
- 16S sequence: FJ821731
- Sequence Identity:
- Total samples: 14541
- soil counts: 9043
- aquatic counts: 1845
- animal counts: 1438
- plant counts: 2215
Safety information
risk assessment
- @ref: 15432
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15432
- description: Rhodanobacter umsongensis strain GR24-2 16S ribosomal RNA gene, partial sequence
- accession: FJ821731
- length: 1477
- database: ena
- NCBI tax ID: 633153
GC content
- @ref: 15432
- GC-content: 64.0
- method: high performance liquid chromatography (HPLC)
External links
@ref: 15432
culture collection no.: DSM 21300, CCM 7935, KACC 12917
straininfo link
- @ref: 86518
- straininfo: 401885
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23625230 | Rhodanobacter umsongensis sp. nov., isolated from a Korean ginseng field. | Kim YS, Kim SJ, Anandham R, Weon HY, Kwon SW | J Microbiol | 10.1007/s12275-013-2516-z | 2013 | Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Panax/growth & development/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Xanthomonadaceae/*classification/genetics/*isolation & purification/metabolism | Metabolism |
| Phylogeny | 25604344 | Rhodanobacter koreensis sp. nov., a bacterium isolated from tomato rhizosphere. | Won K, Singh H, Ngo HTT, Son H, Kook M, Kim KY, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.000077 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lycopersicon esculentum/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
| Phylogeny | 29952746 | Rhodanobacter hydrolyticus sp. nov., a novel DNA- and tyrosine-hydrolysing gammaproteobacterium isolated from forest soil. | Dahal RH, Chaudhary DK, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002881 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Tyrosine/metabolism, Xanthomonadaceae/*classification/growth & development/isolation & purification | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 15432 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21300) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21300 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 86518 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401885.1 | StrainInfo: A central database for resolving microbial strain identifiers |