Name: Rhodanobacter ginsengisoli GR177
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17516

Type strain:

Species: Rhodanobacter ginsengisoli

Strain Designation: GR177

Culture col. no.: DSM 18993, KACC 11762

Strain history: <- S.-W. Kwon, KACC, Suwon, Korea

NCBI tax ID(s): 418646 (species)

SI-ID 407219

DSM 18993

Special Collections

Section

Rhodanobacter ginsengisoli GR177 is an aerobe, Gram-negative, motile bacterium that was isolated from soil of ginseng field.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Rhodanobacter*
	Species	**Rhodanobacter ginsengisoli**
	Full Scientific Name (LPSN)	Rhodanobacter ginsengisoli Weon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32132]	Gram stain	negative

[Ref.: #32132]	Cell length	2.75 µm

[Ref.: #32132]	Cell width	0.55 µm

[Ref.: #32132]	Cell shape	rod-shaped

[Ref.: #32132]	Motility	yes

[Ref.: #32132]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7818]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #7818]

Culture medium growth

[Ref.: #7818]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7818]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7818]	growth	28 °C
[Ref.: #32132]	growth	05-35 °C
[Ref.: #32132]	optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #32132]			optimum	7
[Ref.: #32132]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32132]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32132]		NaCl		growth	<3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32132]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #32132]	acetate ChEBI	+	carbon source
[Ref.: #32132]	esculin ChEBI	+	hydrolysis
[Ref.: #32132]	glucose ChEBI	+	carbon source
[Ref.: #32132]	maltose ChEBI	+	carbon source
[Ref.: #32132]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32132]	proline ChEBI	+	carbon source
[Ref.: #32132]	tween 80 ChEBI	+	carbon source
[Ref.: #32132]	valerate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32132]	acid phosphatase	+	3.1.3.2
[Ref.: #32132]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32132]	catalase	+	1.11.1.6
[Ref.: #32132]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32132]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7818]	Sample type/isolated from	soil of ginseng field
[Ref.: #7818]	Geographic location (country and/or sea, region)	Yeongju province
[Ref.: #7818]	Country	Republic of Korea
[Ref.: #7818]	Country ISO 3 Code	KOR
[Ref.: #7818]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7818]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7818]	Rhodanobacter ginsengisoli strain GR17-7 16S ribosomal RNA gene, partial sequence	EF166075	1436	GenBank ENA	418646 tax ID

[Ref.: #32132]

GC-content

61 mol%

Availability in culture collections External links

[Ref.: #7818]

Culture collection no.

DSM 18993, KACC 11762

[Ref.: #86513]

SI-ID 407219

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodanobacter ginsengisoli sp. nov. and Rhodanobacter terrae sp. nov., isolated from soil cultivated with Korean ginseng.	Weon HY, Kim BY, Hong SB, Jeon YA, Kwon SW, Go SJ, Koo BS	Int J Syst Evol Microbiol	10.1099/ijs.0.65018-0	2007	*

References

#7818

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18993

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32132

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28376 (see below)

#86513

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407219.1 )

#28376

IJSEM 2810 2007 ( DOI 10.1099/ijs.0.65018-0 , PubMed 18048729 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhodanobacter ginsengisoli in external resources:
SILVA
BRENDA
PANGAEA
GBIF