General

@ref: 7818

BacDive-ID: 17516

DSM-Number: 18993

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Rhodanobacter ginsengisoli GR177 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil of ginseng field.

NCBI tax id

• NCBI tax id: 418646
• Matching level: species

strain history

• @ref: 7818
• history: <- S.-W. Kwon, KACC, Suwon, Korea

doi: 10.13145/bacdive17516.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Lysobacterales
• family: Rhodanobacteraceae
• genus: Rhodanobacter
• species: Rhodanobacter ginsengisoli
• full scientific name: Rhodanobacter ginsengisoli Weon et al. 2007

@ref: 7818

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Rhodanobacteraceae

genus: Rhodanobacter

species: Rhodanobacter ginsengisoli

full scientific name: Rhodanobacter ginsengisoli Weon et al. 2007

strain designation: GR177

type strain: yes

Morphology

cell morphology

• @ref: 32132
• gram stain: negative
• cell length: 2.75 µm
• cell width: 0.55 µm
• cell shape: rod-shaped
• motility: yes

pigmentation

• @ref: 32132
• production: yes

Culture and growth conditions

culture medium

• @ref: 7818
• name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
• growth: yes
• link: https://mediadive.dsmz.de/medium/830c
• composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

culture pH

Physiology and metabolism

oxygen tolerance

• @ref: 32132
• oxygen tolerance: aerobe

halophily

• @ref: 32132
• salt: NaCl
• growth: positive
• tested relation: growth
• concentration: <3 %

metabolite utilization

enzymes

Isolation, sampling and environmental information

isolation

• @ref: 7818
• sample type: soil of ginseng field
• geographic location: Yeongju province
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

isolation source categories

Safety information

risk assessment

• @ref: 7818
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 7818
• description: Rhodanobacter ginsengisoli strain GR17-7 16S ribosomal RNA gene, partial sequence
• accession: EF166075
• length: 1436
• database: ena
• NCBI tax ID: 418646

GC content

• @ref: 32132
• GC-content: 61

External links

@ref: 7818

culture collection no.: DSM 18993, KACC 11762

straininfo link

• @ref: 86513
• straininfo: 407219

literature

• topic: Phylogeny
• Pubmed-ID: 18048729
• title: Rhodanobacter ginsengisoli sp. nov. and Rhodanobacter terrae sp. nov., isolated from soil cultivated with Korean ginseng.
• authors: Weon HY, Kim BY, Hong SB, Jeon YA, Kwon SW, Go SJ, Koo BS
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.65018-0
• year: 2007
• mesh: Base Composition, Catalase/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/analysis, Panax, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Xanthomonadaceae/chemistry/*classification/genetics/*isolation & purification
• topic2: Genetics

Reference