Pseudoxanthobacter soli CC-CC4, CC-4 | Type strain | DSM 19599, CIP 109513, CCUG 54547, CC 4 | BacDiveID:17442

Strain identifier

BacDive ID: 17442

Type strain:

Species: Pseudoxanthobacter soli

Strain Designation: CC-CC4, CC-4

Culture col. no.: DSM 19599, CIP 109513, CCUG 54547, CC 4

Strain history: CIP <- 2007, P. Kämpfer, Giesssen Univ., Giessen, Germany: strain CC-4

NCBI tax ID(s): 1123029 (strain), 433840 (species)

SI-ID 358831

CIP 109513, DSM 19599

Section

Pseudoxanthobacter soli CC-CC4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil sample collected at a regional agricultural research field station.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Pseudoxanthobacteraceae*
	Genus	*Pseudoxanthobacter*
	Species	**Pseudoxanthobacter soli**
	Full Scientific Name (LPSN)	Pseudoxanthobacter soli Arun et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32256]	Gram stain	negative
[Ref.: #122663]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #32256]	Cell length	2 µm

[Ref.: #32256]	Cell width	0.2 µm

[Ref.: #32256]	Cell shape	rod-shaped
[Ref.: #122663]	Cell shape	rod-shaped

[Ref.: #32256]	Motility	yes
[Ref.: #122663]	Motility	yes

Incubation period

1 day

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 72- for trypto casein soja agar

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #122663]

Culture medium

CIP Medium 72

[Ref.: #122663]

Culture medium growth

[Ref.: #122663]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8202]			growth	28 °C
[Ref.: #32256]			growth	10-37 °C
[Ref.: #32256]			optimum	37 °C
[Ref.: #37749]			growth	30 °C
[Ref.: #60225]			growth	28-37 °C

[Ref.: #8202]	Temperature range	mesophilic
[Ref.: #32256]	Temperature range	mesophilic
[Ref.: #37749]	Temperature range	mesophilic
[Ref.: #60225]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32256]			optimum	7
[Ref.: #32256]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32256]	Oxygen tolerance	aerobe
[Ref.: #60225]	Oxygen tolerance	aerobe
[Ref.: #122663]	Oxygen tolerance	obligate aerobe

[Ref.: #32256]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32256]		acetate ChEBI	+	carbon source
[Ref.: #32256]		alanine ChEBI	+	carbon source
[Ref.: #32256]		arabinose ChEBI	+	carbon source
[Ref.: #32256]		asparagine ChEBI	+	carbon source
[Ref.: #32256]		formate ChEBI	+	carbon source
[Ref.: #32256]		fructose ChEBI	+	carbon source
[Ref.: #32256]		fucose ChEBI	+	carbon source
[Ref.: #32256]		galactose ChEBI	+	carbon source
[Ref.: #32256]		glucose ChEBI	+	carbon source
[Ref.: #32256]		glutamate ChEBI	+	carbon source
[Ref.: #32256]		glycerol ChEBI	+	carbon source
[Ref.: #32256]		L-alaninamide ChEBI	+	carbon source
[Ref.: #32256]		L-arabitol ChEBI	+	carbon source
[Ref.: #32256]		lactate ChEBI	+	carbon source
[Ref.: #32256]		mannitol ChEBI	+	carbon source
[Ref.: #32256]		mannose ChEBI	+	carbon source
[Ref.: #32256]		myo-inositol ChEBI	+	carbon source
[Ref.: #122663]		nitrate ChEBI	-	reduction
[Ref.: #122663]		nitrite ChEBI	-	reduction
[Ref.: #32256]		proline ChEBI	+	carbon source
[Ref.: #32256]		rhamnose ChEBI	+	carbon source
[Ref.: #32256]		ribitol ChEBI	+	carbon source
[Ref.: #32256]		sorbitol ChEBI	+	carbon source
[Ref.: #32256]		succinate ChEBI	+	carbon source
[Ref.: #32256]		xylitol ChEBI	+	carbon source
		Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122663]		indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32256]		catalase	+	1.11.1.6
[Ref.: #122663]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #32256]		cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]		lipase (C 14)	+		* from API zym
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122663]		oxidase	+
[Ref.: #68382]		trypsin	+	3.4.21.4	* from API zym
[Ref.: #122663]		urease	+	3.5.1.5
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122663]	11922	-	+	+	+	+	+	+	+	+	-	+	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions	External links
	Pathway annotation	Computationally determined by
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	propanol degradation	100	7 of 7
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	degradation of sugar acids	88	22 of 25
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	purine metabolism	84.04	79 of 94
[Ref.: #66794]	pyrimidine metabolism	82.22	37 of 45
[Ref.: #66794]	degradation of pentoses	82.14	23 of 28
[Ref.: #66794]	degradation of sugar alcohols	81.25	13 of 16
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	3-phenylpropionate degradation	80	12 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	arginine metabolism	79.17	19 of 24
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	histidine metabolism	75.86	22 of 29
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	d-xylose degradation	72.73	8 of 11
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	oxidative phosphorylation	68.13	62 of 91
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	66.67	6 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	ascorbate metabolism	63.64	14 of 22
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	androgen and estrogen metabolism	62.5	10 of 16
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	methanofuran biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	35.29	6 of 17
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8202]	Sample type/isolated from	soil sample collected at a regional agricultural research field station
[Ref.: #8202]	Geographic location (country and/or sea, region)	Kaohsiung County
[Ref.: #8202]	Country	Taiwan
[Ref.: #8202]	Country ISO 3 Code	TWN
[Ref.: #8202]	Continent	Asia

[Ref.: #60225]	Sample type/isolated from	Soil
[Ref.: #60225]	Sampling date	2000
[Ref.: #60225]	Geographic location (country and/or sea, region)	Chyai County
[Ref.: #60225]	Country	Taiwan
[Ref.: #60225]	Country ISO 3 Code	TWN
[Ref.: #60225]	Continent	Asia

[Ref.: #122663]	Sample type/isolated from	Environment, Soil
[Ref.: #122663]	Geographic location (country and/or sea, region)	Chyai county
[Ref.: #122663]	Country	Taiwan
[Ref.: #122663]	Country ISO 3 Code	TWN
[Ref.: #122663]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Global distribution of 16S sequence EF465533 (>99% sequence identity) for Pseudoxanthobacter from Microbeatlas

Aquatic Samples	152
Soil Samples	33
Animal Samples	79
Plant Samples	32
Total Samples	296

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8202]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122663]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8202]	Pseudoxanthobacter soli DSM 19599 16S ribosomal RNA gene, partial sequence	EF465533	1436	ENA	1123029 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoxanthobacter soli DSM 19599	GCA_900148505	scaffold	GenBank	1123029 tax ID	*
[Ref.: #66792]	Pseudoxanthobacter soli DSM 19599	1123029.3	wgs	PATRIC	1123029 tax ID	*
[Ref.: #66792]	Pseudoxanthobacter soli DSM 19599	2585428043	draft	JGI IMG/M	1123029 tax ID	*
[Ref.: #66792]	Pseudoxanthobacter soli DSM 19599 MsE-30jul19-87	GCA_945898215	scaffold	GenBank	1123029 tax ID	*
[Ref.: #66792]	Pseudoxanthobacter soli DSM 19599 strain MsE-30jul19-87	1123029.10	wgs	PATRIC	1123029 tax ID	*

[Ref.: #8202]	GC-content	68.0 mol%
[Ref.: #32256]	GC-content	68 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoxanthobacter soli DSM 19599 DSM 19599 NCBI: GCA_900148505.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoxanthobacter soli DSM 19599 DSM 19599 NCBI: GCA_900148505.1
[Ref.: #69480]	motile	yes	78.322	no
[Ref.: #69480]	flagellated	no	80.677	no
[Ref.: #69480]	gram-positive	no	97.499	yes
[Ref.: #69480]	anaerobic	no	98.078	no
[Ref.: #69480]	aerobic	yes	89.188	yes
[Ref.: #69480]	halophile	no	93.217	no
[Ref.: #69480]	spore-forming	no	95.639	yes
[Ref.: #69480]	thermophile	no	97.227	yes
[Ref.: #69480]	glucose-util	yes	92.296	yes
[Ref.: #69480]	glucose-ferment	no	89.986	no

Availability in culture collections External links

Culture collection no.

DSM 19599, CIP 109513, CCUG 54547, CC 4

SI-ID 358831

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoxanthobacter liyangensis sp. nov., isolated from dichlorodiphenyltrichloroethane-contaminated soil.	Liu XM, Chen K, Meng C, Zhang L, Zhu JC, Huang X, Li SP, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijs.0.056507-0	2014	*
Phylogeny	Segnochrobactrum spirostomi gen. nov., sp. nov., isolated from the ciliate Spirostomum yagiui and description of a novel family, Segnochrobactraceae fam. nov. within the order Rhizobiales of the class Alphaproteobacteria.	Akter S, Shazib SUA, Shin MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.003907	2020	*
Phylogeny	Pseudoxanthobacter soli gen. nov., sp. nov., a nitrogen-fixing alphaproteobacterium isolated from soil.	Arun AB, Schumann P, Chu HI, Tan CC, Chen WM, Lai WA, Kampfer P, Shen FT, Rekha PD, Hung MH, Chou JH, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.65206-0	2008	*

References

#8202

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19599

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32256

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28497 (see below)

#37749 ; Curators of the CIP;
#60225 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54547

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86438

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID358831.1 )

#122663 Collection of Institut Pasteur ; Curators of the CIP; CIP 109513

#28497

IJSEM 1571 2008 ( DOI 10.1099/ijs.0.65206-0 , PubMed 18599697 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.