Name: Labrys portucalensis F 11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17411

Type strain:

Species: Labrys portucalensis

Strain Designation: F 11

Culture col. no.: DSM 17916, LMG 23412

Strain history: <- P. De Marco, IBMC - MCA, Univ. Porto; F 11 <- M. F. Carvalho, Univ. Catolica Portuguesa

NCBI tax ID(s): 253547 (species)

SI-ID 289782

LMG 23412, DSM 17916

Special Collections

Section

Labrys portucalensis F 11 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from polluted soil .

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Labrys*
	Species	**Labrys portucalensis**
	Full Scientific Name (LPSN)	Labrys portucalensis Carvalho et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32421]	Gram stain	negative

[Ref.: #32421]	Cell length	0.9 µm

[Ref.: #32421]	Cell width	0.75 µm

[Ref.: #32421]	Cell shape	rod-shaped

[Ref.: #32421]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7243]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #7243]

Culture medium growth

[Ref.: #7243]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7243]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7243]	growth	28 °C
[Ref.: #32421]	growth	16-37 °C
[Ref.: #32421]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #32421]			optimum	7
[Ref.: #32421]			growth	04-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32421]

Oxygen tolerance

aerobe

[Ref.: #32421]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32421]	acetate ChEBI	+	carbon source
[Ref.: #32421]	arabinose ChEBI	+	carbon source
[Ref.: #32421]	citrate ChEBI	+	carbon source
[Ref.: #32421]	esculin ChEBI	+	hydrolysis
[Ref.: #32421]	ethanol ChEBI	+	carbon source
[Ref.: #32421]	gluconate ChEBI	+	carbon source
[Ref.: #32421]	glucose ChEBI	+	carbon source
[Ref.: #32421]	glycerol ChEBI	+	carbon source
[Ref.: #32421]	lactate ChEBI	+	carbon source
[Ref.: #32421]	lactose ChEBI	+	carbon source
[Ref.: #32421]	malate ChEBI	+	carbon source
[Ref.: #32421]	mannitol ChEBI	+	carbon source
[Ref.: #32421]	mannose ChEBI	+	carbon source
[Ref.: #32421]	N-acetylglucosamine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32421]	catalase	+	1.11.1.6
[Ref.: #32421]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32421]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7243]	Sample type/isolated from	polluted soil (sediment)
[Ref.: #7243]	Geographic location (country and/or sea, region)	Estarreja
[Ref.: #7243]	Country	Portugal
[Ref.: #7243]	Country ISO 3 Code	PRT
[Ref.: #7243]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY362040 (>99% sequence identity) for Labrys from Microbeatlas

Aquatic Samples	509
Soil Samples	1324
Animal Samples	273
Plant Samples	169
Total Samples	2275

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7243]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7243]	Labrys portucalensis strain F11 16S ribosomal RNA gene, partial sequence	AY362040	1449	GenBank ENA	253547 tax ID

[Ref.: #7243]

GC-content

62.9 mol%

Availability in culture collections External links

[Ref.: #7243]

Culture collection no.

DSM 17916, LMG 23412

[Ref.: #86407]

SI-ID 289782

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys.	Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.014977-0	2009	*
Phylogeny	Labrys portucalensis sp. nov., a fluorobenzene-degrading bacterium isolated from an industrially contaminated sediment in northern Portugal.	Carvalho MF, De Marco P, Duque AF, Pacheco CC, Janssen DB, Castro PM	Int J Syst Evol Microbiol	10.1099/ijs.0.65472-0	2008	*

References

#7243

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17916

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32421

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28644 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86407

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289782.1 )

#28644

IJSEM 692 2008 ( DOI 10.1099/ijs.0.65472-0 , PubMed 18319480 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Labrys portucalensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF