Strain identifier

BacDive ID: 17411

Type strain: Yes

Species: Labrys portucalensis

Strain Designation: F 11

Strain history: <- P. De Marco, IBMC - MCA, Univ. Porto; F 11 <- M. F. Carvalho, Univ. Catolica Portuguesa

NCBI tax ID(s): 253547 (species)

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General

@ref: 7243

BacDive-ID: 17411

DSM-Number: 17916

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Labrys portucalensis F 11 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from polluted soil .

NCBI tax id

  • NCBI tax id: 253547
  • Matching level: species

strain history

  • @ref: 7243
  • history: <- P. De Marco, IBMC - MCA, Univ. Porto; F 11 <- M. F. Carvalho, Univ. Catolica Portuguesa

doi: 10.13145/bacdive17411.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Labrys
  • species: Labrys portucalensis
  • full scientific name: Labrys portucalensis Carvalho et al. 2008

@ref: 7243

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Labrys

species: Labrys portucalensis

full scientific name: Labrys portucalensis Carvalho et al. 2008

strain designation: F 11

type strain: yes

Morphology

cell morphology

  • @ref: 32421
  • gram stain: negative
  • cell length: 0.9 µm
  • cell width: 0.75 µm
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

  • @ref: 7243
  • name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/545
  • composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7243positivegrowth28mesophilic
32421positivegrowth16-37
32421positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
32421positivegrowth04-08acidophile
32421positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 32421
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32421
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3242130089acetate+carbon source
3242122599arabinose+carbon source
3242116947citrate+carbon source
3242116236ethanol+carbon source
3242124265gluconate+carbon source
3242117234glucose+carbon source
3242117754glycerol+carbon source
3242124996lactate+carbon source
3242117716lactose+carbon source
3242125115malate+carbon source
3242129864mannitol+carbon source
3242137684mannose+carbon source
32421506227N-acetylglucosamine+carbon source
324214853esculin+hydrolysis

enzymes

@refvalueactivityec
32421catalase+1.11.1.6
32421cytochrome oxidase+1.9.3.1
32421urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 7243
  • sample type: polluted soil (sediment)
  • geographic location: Estarreja
  • country: Portugal
  • origin.country: PRT
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_157.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_116;97_123;98_138;99_157&stattab=map
  • Last taxonomy: Labrys
  • 16S sequence: AY362040
  • Sequence Identity:
  • Total samples: 2275
  • soil counts: 1324
  • aquatic counts: 509
  • animal counts: 273
  • plant counts: 169

Safety information

risk assessment

  • @ref: 7243
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7243
  • description: Labrys portucalensis strain F11 16S ribosomal RNA gene, partial sequence
  • accession: AY362040
  • length: 1449
  • database: ena
  • NCBI tax ID: 253547

GC content

  • @ref: 7243
  • GC-content: 62.9

External links

@ref: 7243

culture collection no.: DSM 17916, LMG 23412

straininfo link

  • @ref: 86407
  • straininfo: 289782

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18319480Labrys portucalensis sp. nov., a fluorobenzene-degrading bacterium isolated from an industrially contaminated sediment in northern Portugal.Carvalho MF, De Marco P, Duque AF, Pacheco CC, Janssen DB, Castro PMInt J Syst Evol Microbiol10.1099/ijs.0.65472-02008Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Biodegradation, Environmental, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fluorobenzenes/*metabolism, Genes, rRNA, Geologic Sediments/*microbiology, *Industry, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Pollutants, Species SpecificityGenetics
Phylogeny19684322Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys.Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.014977-02009Alphaproteobacteria/*classification/genetics/isolation & purification/physiology, Base Sequence, Fresh Water/*microbiology, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7243Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17916)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17916
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32421Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2864428776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86407Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID289782.1StrainInfo: A central database for resolving microbial strain identifiers