Strain identifier
BacDive ID: 17411
Type strain:
Species: Labrys portucalensis
Strain Designation: F 11
Strain history: <- P. De Marco, IBMC - MCA, Univ. Porto; F 11 <- M. F. Carvalho, Univ. Catolica Portuguesa
NCBI tax ID(s): 253547 (species)
General
@ref: 7243
BacDive-ID: 17411
DSM-Number: 17916
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Labrys portucalensis F 11 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from polluted soil .
NCBI tax id
- NCBI tax id: 253547
- Matching level: species
strain history
- @ref: 7243
- history: <- P. De Marco, IBMC - MCA, Univ. Porto; F 11 <- M. F. Carvalho, Univ. Catolica Portuguesa
doi: 10.13145/bacdive17411.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Xanthobacteraceae
- genus: Labrys
- species: Labrys portucalensis
- full scientific name: Labrys portucalensis Carvalho et al. 2008
@ref: 7243
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Xanthobacteraceae
genus: Labrys
species: Labrys portucalensis
full scientific name: Labrys portucalensis Carvalho et al. 2008
strain designation: F 11
type strain: yes
Morphology
cell morphology
- @ref: 32421
- gram stain: negative
- cell length: 0.9 µm
- cell width: 0.75 µm
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
- @ref: 7243
- name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
- growth: yes
- link: https://mediadive.dsmz.de/medium/545
- composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7243 | positive | growth | 28 | mesophilic |
32421 | positive | growth | 16-37 | |
32421 | positive | optimum | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32421 | positive | growth | 04-08 | acidophile |
32421 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 32421
- oxygen tolerance: aerobe
spore formation
- @ref: 32421
- spore formation: no
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32421 | 30089 | acetate | + | carbon source |
32421 | 22599 | arabinose | + | carbon source |
32421 | 16947 | citrate | + | carbon source |
32421 | 16236 | ethanol | + | carbon source |
32421 | 24265 | gluconate | + | carbon source |
32421 | 17234 | glucose | + | carbon source |
32421 | 17754 | glycerol | + | carbon source |
32421 | 24996 | lactate | + | carbon source |
32421 | 17716 | lactose | + | carbon source |
32421 | 25115 | malate | + | carbon source |
32421 | 29864 | mannitol | + | carbon source |
32421 | 37684 | mannose | + | carbon source |
32421 | 506227 | N-acetylglucosamine | + | carbon source |
32421 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32421 | catalase | + | 1.11.1.6 |
32421 | cytochrome oxidase | + | 1.9.3.1 |
32421 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 7243
- sample type: polluted soil (sediment)
- geographic location: Estarreja
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Contamination | |
#Environmental | #Aquatic | #Sediment |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_157.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_116;97_123;98_138;99_157&stattab=map
- Last taxonomy: Labrys
- 16S sequence: AY362040
- Sequence Identity:
- Total samples: 2275
- soil counts: 1324
- aquatic counts: 509
- animal counts: 273
- plant counts: 169
Safety information
risk assessment
- @ref: 7243
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7243
- description: Labrys portucalensis strain F11 16S ribosomal RNA gene, partial sequence
- accession: AY362040
- length: 1449
- database: ena
- NCBI tax ID: 253547
GC content
- @ref: 7243
- GC-content: 62.9
External links
@ref: 7243
culture collection no.: DSM 17916, LMG 23412
straininfo link
- @ref: 86407
- straininfo: 289782
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 18319480 | Labrys portucalensis sp. nov., a fluorobenzene-degrading bacterium isolated from an industrially contaminated sediment in northern Portugal. | Carvalho MF, De Marco P, Duque AF, Pacheco CC, Janssen DB, Castro PM | Int J Syst Evol Microbiol | 10.1099/ijs.0.65472-0 | 2008 | Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Biodegradation, Environmental, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fluorobenzenes/*metabolism, Genes, rRNA, Geologic Sediments/*microbiology, *Industry, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Pollutants, Species Specificity | Genetics |
Phylogeny | 19684322 | Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys. | Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.014977-0 | 2009 | Alphaproteobacteria/*classification/genetics/isolation & purification/physiology, Base Sequence, Fresh Water/*microbiology, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
7243 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17916) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17916 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
32421 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28644 | 28776041 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
86407 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID289782.1 | StrainInfo: A central database for resolving microbial strain identifiers |