Name: Ancylobacter rudongensis YCM 11671
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17402

Type strain:

Species: Ancylobacter rudongensis

Strain Designation: YCM 11671

Culture col. no.: DSM 17131, AS 1.1761, JCM 11671, BCRC 17434, CGMCC 1.1761, CIP 108316, NCIMB 14355

Strain history: CIP <- 2004, JCM <- 2002, AS <- Y.H. Xin

NCBI tax ID(s): 177413 (species)

SI-ID 131414

AS 1.1761, JCM 11671, DSM 17131, BCRC 17434, CCRC 17434, CIP 108316, CGMCC 1.1761

Other strains from Ancylobacter rudongensis

A. rudongensis AD27, DSM 9000

Section

Ancylobacter rudongensis YCM 11671 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from roots of Spartina anglica.

Gram-negative
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Ancylobacter*
	Species	**Ancylobacter rudongensis**
	Full Scientific Name (LPSN)	Ancylobacter rudongensis Xin et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29894]	Gram stain	negative
[Ref.: #122301]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.98

[Ref.: #29894]	Cell shape	rod-shaped
[Ref.: #122301]	Cell shape	rod-shaped

[Ref.: #29894]	Motility	no
[Ref.: #122301]	Motility	yes

[Ref.: #29894]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6778]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #6778]

Culture medium growth

[Ref.: #6778]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6778]

Culture medium composition

expand / minimize

[Ref.: #39992]

Culture medium

MEDIUM 593 - for Ancylobacter rudongensis

[Ref.: #39992]

Culture medium growth

[Ref.: #39992]

Culture medium composition

expand / minimize

[Ref.: #122301]

Culture medium

CIP Medium 289

[Ref.: #122301]

Culture medium growth

[Ref.: #122301]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6778]		growth	30 °C
[Ref.: #29894]		growth	05-44 °C
[Ref.: #29894]		optimum	29 °C
[Ref.: #39992]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #122301]		growth	15-37 °C
[Ref.: #122301]	no	growth	10 °C
[Ref.: #122301]	no	growth	41 °C
[Ref.: #122301]	no	growth	45 °C

[Ref.: #6778]	Temperature range	mesophilic
[Ref.: #29894]	Temperature range	mesophilic
[Ref.: #39992]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122301]	Temperature range	psychrophilic
[Ref.: #122301]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #29894]			optimum	6.9
[Ref.: #29894]			growth	5.6-9.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122301]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987

	Salt	Tested relation		Salt conc.
[Ref.: #29894]	NaCl		growth	0-5	%
[Ref.: #29894]	NaCl		optimum	2.5	%
[Ref.: #122301]	NaCl		growth	0-4	%
[Ref.: #122301]	NaCl	no	growth	6	%
[Ref.: #122301]	NaCl	no	growth	8	%
[Ref.: #122301]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29894]	alanine ChEBI	+	carbon source
[Ref.: #29894]	arabinose ChEBI	+	carbon source
[Ref.: #29894]	cellobiose ChEBI	+	carbon source
[Ref.: #122301]	citrate ChEBI	+	carbon source
[Ref.: #29894]	dextrin ChEBI	+	carbon source
[Ref.: #29894]	esculin ChEBI	+	hydrolysis
[Ref.: #122301]	esculin ChEBI	+	hydrolysis
[Ref.: #29894]	fructose ChEBI	+	carbon source
[Ref.: #29894]	galactose ChEBI	+	carbon source
[Ref.: #29894]	glucose ChEBI	+	carbon source
[Ref.: #29894]	glycerol ChEBI	+	carbon source
[Ref.: #122301]	hippurate ChEBI	-	hydrolysis
[Ref.: #29894]	lactose ChEBI	+	carbon source
[Ref.: #29894]	maltose ChEBI	+	carbon source
[Ref.: #29894]	mannitol ChEBI	+	carbon source
[Ref.: #29894]	melibiose ChEBI	+	carbon source
[Ref.: #29894]	nitrate ChEBI	+	reduction
[Ref.: #122301]	nitrate ChEBI	-	reduction
[Ref.: #122301]	nitrate ChEBI	-	respiration
[Ref.: #122301]	nitrite ChEBI	-	reduction
[Ref.: #29894]	proline ChEBI	+	carbon source
[Ref.: #29894]	ribitol ChEBI	+	carbon source
[Ref.: #29894]	ribose ChEBI	+	carbon source
[Ref.: #29894]	sorbitol ChEBI	+	carbon source
[Ref.: #29894]	sucrose ChEBI	+	carbon source
[Ref.: #29894]	trehalose ChEBI	+	carbon source
[Ref.: #29894]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122301]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122301]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122301]		acetoin ChEBI	-
[Ref.: #122301]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122301]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122301]	amylase	-
[Ref.: #122301]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122301]	caseinase	-	3.4.21.50
[Ref.: #122301]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122301]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #122301]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122301]	gelatinase	-
[Ref.: #122301]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122301]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122301]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122301]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122301]	oxidase	+
[Ref.: #122301]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #122301]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122301]	tryptophan deaminase	-
[Ref.: #122301]	tween esterase	+
[Ref.: #122301]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122301]	2699	not determinedn.d.	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	+	-	+	-	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122301]	11081	-	+	+	-	-	+	+	-	+	-	+	+	-	-	-	-	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	photosynthesis	100	14 of 14
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	methanofuran biosynthesis	100	5 of 5
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	chorismate metabolism	100	9 of 9
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	arginine metabolism	79.17	19 of 24
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	degradation of sugar alcohols	75	12 of 16
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	purine metabolism	74.47	70 of 94
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	oxidative phosphorylation	72.53	66 of 91
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	degradation of pentoses	71.43	20 of 28
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	pyrimidine metabolism	62.22	28 of 45
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	methanogenesis from CO2	58.33	7 of 12
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	53.85	7 of 13
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	degradation of sugar acids	52	13 of 25
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	23.53	4 of 17
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6778]	Sample type/isolated from	roots of Spartina anglica
[Ref.: #6778]	Host species	Spartina anglica
[Ref.: #6778]	Geographic location (country and/or sea, region)	Jiangsu Province, beach
[Ref.: #6778]	Country	China
[Ref.: #6778]	Country ISO 3 Code	CHN
[Ref.: #6778]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Roots of Spartina anglica in Rudong Country
[Ref.: #67770]	Host species	Spartina anglica
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangsu Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #122301]	Sample type/isolated from	Plant, Root of Spartina anglica
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY056830 (>99% sequence identity) for Ancylobacter from Microbeatlas

Aquatic Samples	2318
Soil Samples	1085
Animal Samples	1936
Plant Samples	762
Total Samples	6101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6778]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122301]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6778]	Ancylobacter sp. AS1.1761 16S ribosomal RNA gene, partial sequence	AY056830	1457	ENA	177413 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ancylobacter rudongensis CGMCC 1.1761	GCA_900100155	contig	GenBank	177413 tax ID
[Ref.: #66792]	Ancylobacter rudongensis strain CGMCC 1.1761	177413.3	wgs	PATRIC	177413 tax ID	*
[Ref.: #66792]	Ancylobacter rudongensis CGMCC 1.1761	2596583652	draft	JGI IMG/M	177413 tax ID	*

[Ref.: #29894]	GC-content	68.2 mol%
[Ref.: #67770]	GC-content	68.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ancylobacter rudongensis strain CGMCC 1.1761 PATRIC: 177413.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ancylobacter rudongensis strain CGMCC 1.1761 PATRIC: 177413.3
[Ref.: #69480]	motile	yes	61.966	yes
[Ref.: #69480]	gram-positive	no	98.327	yes
[Ref.: #69480]	anaerobic	no	97.94	no
[Ref.: #69480]	aerobic	yes	91.045	no
[Ref.: #69480]	halophile	no	86.984	no
[Ref.: #69480]	spore-forming	no	95.771	no
[Ref.: #69480]	thermophile	no	96.744	no
[Ref.: #69480]	glucose-util	yes	93.01	yes
[Ref.: #69480]	flagellated	no	58.906	no
[Ref.: #69480]	glucose-ferment	no	90.613	no

Availability in culture collections External links

[Ref.: #6778]

Culture collection no.

DSM 17131, AS 1.1761, JCM 11671, BCRC 17434, CGMCC 1.1761, CIP 108316, NCIMB 14355

[Ref.: #86400]

SI-ID 131414

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ancylobacter pratisalsi sp. nov. with plant growth promotion abilities from the rhizosphere of Plantago winteri Wirtg.	Suarez C, Ratering S, Schafer J, Schnell S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002320	2017	*
Phylogeny	Description of Ancylobacter oerskovii sp. nov. and two additional strains of Ancylobacter polymorphus.	Lang E, Swiderski J, Stackebrandt E, Schumann P, Sproer C, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.65666-0	2008	*
Phylogeny	Ancylobacter polymorphus sp. nov. and Ancylobacter vacuolatus sp. nov.	Xin YH, Zhou YG, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.64118-0	2006	*
Phylogeny	Ancylobacter rudongensis sp. nov., isolated from roots of Spartina anglica.	Xin YH, Zhou YG, Zhou HL, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.02466-0	2004	*

References

#6778

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17131

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29894

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26267 (see below)

#39992 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86400

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131414.1 )

#122301 Collection of Institut Pasteur ; Curators of the CIP; CIP 108316

#26267

IJSEM 385 2004 ( DOI 10.1099/ijs.0.02466-0 , PubMed 15023948 )

* These data were automatically processed and therefore are not curated

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Ancylobacter rudongensis strain CGMCC 1.1761

Ancylobacter rudongensis strain CGMCC 1.1761

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