Name: Vibrio owensii R-40496
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17351

Type strain:

Species: Vibrio owensii

Strain Designation: R-40496

Culture col. no.: DSM 25291, CAIM 1816, LMG 25430

Strain history: <- LMG <- I. Cleenwerck, University Ghent <- L. A. Chimetto, Institut de Biologia, Univ. Estadual de Campinas, Brazil; FR-233

NCBI tax ID(s): 1280004 (strain), 696485 (species)

SI-ID 362408

LMG 25430, DSM 25291

Special Collections

Other strains from Vibrio owensii

Section

Vibrio owensii R-40496 is a Gram-negative, motile, ovoid-shaped animal pathogen that was isolated from mucus of the endemic coral Mussismilia hispida.

Gram-negative
motile
ovoid-shaped
animal pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio owensii**
	Full Scientific Name (LPSN)	Vibrio owensii Cano-Gómez et al. 2010

Synonym

Vibrio communis

Information on morphological and physiological properties Morphology

[Ref.: #29735]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #29735]	Cell length	3 µm

[Ref.: #29735]	Cell width	1 µm

[Ref.: #29735]	Cell shape	ovoid-shaped

[Ref.: #29735]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17983]

Culture medium

VIBRIO NATRIEGENS MEDIUM (DSMZ Medium 115)

[Ref.: #17983]

Culture medium growth

[Ref.: #17983]

Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17983]

Culture medium growth

[Ref.: #17983]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17983]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17983]	growth	28 °C
[Ref.: #29735]	growth	07-42 °C
[Ref.: #29735]	optimum	26 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29735]		NaCl		optimum	3.75	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #29735]	alanine ChEBI	+	carbon source
[Ref.: #29735]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #29735]	asparagine ChEBI	+	carbon source
[Ref.: #29735]	aspartate ChEBI	+	carbon source
[Ref.: #29735]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #29735]	dextrin ChEBI	+	carbon source
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #29735]	fructose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #29735]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #29735]	glucose ChEBI	+	carbon source
[Ref.: #29735]	glutamate ChEBI	+	carbon source
[Ref.: #29735]	glycerol ChEBI	+	carbon source
[Ref.: #29735]	glycogen ChEBI	+	carbon source
[Ref.: #29735]	inosine ChEBI	+	carbon source
[Ref.: #29735]	L-alaninamide ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #29735]	lactate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #29735]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #29735]	mannitol ChEBI	+	carbon source
[Ref.: #29735]	mannose ChEBI	+	carbon source
[Ref.: #29735]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29735]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #29735]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #29735]	sucrose ChEBI	+	carbon source
[Ref.: #29735]	threonine ChEBI	+	carbon source
[Ref.: #29735]	thymidine ChEBI	+	carbon source
[Ref.: #29735]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #29735]	tween 40 ChEBI	+	carbon source
[Ref.: #29735]	tween 80 ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #29735]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #29735]	acid phosphatase	+	3.1.3.2
[Ref.: #29735]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29735]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #29735]	catalase	+	1.11.1.6
[Ref.: #29735]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #29735]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #17983]	24818	+	+	+	-	-	+	+	+	+	-	+	+	-	+	+	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17983]	Sample type/isolated from	mucus of the endemic coral Mussismilia hispida
[Ref.: #17983]	Host species	Mussismilia hispida
[Ref.: #17983]	Geographic location (country and/or sea, region)	São Sebastião channel
[Ref.: #17983]	Country	Brazil
[Ref.: #17983]	Country ISO 3 Code	BRA
[Ref.: #17983]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU078672 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	169
Soil Samples	4
Animal Samples	159
Plant Samples	13
Total Samples	345

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17983]	Pathogenicity (animal)	yes
[Ref.: #17983]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29735]	Vibrio sp. LMG 20370 partial 16S rRNA gene, strain LMG 20370	AJ345066	1470	GenBank ENA	696485 tax ID
[Ref.: #17983]	Vibrio communis strain R-40496 16S ribosomal RNA gene, partial sequence	GU078672	1470	GenBank ENA	696485 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio owensii LMG 25430	GCA_000400325	scaffold	GenBank ENA	1280004 tax ID	*
[Ref.: #66792]	Vibrio owensii LMG 25430	1280004.3	wgs	PATRIC	1280004 tax ID	*
[Ref.: #66792]	Vibrio owensii LMG 25430	2568526433	draft	JGI IMG/M	1280004 tax ID	*

[Ref.: #17983]	GC-content	45.92 mol%	sequence analysis
[Ref.: #29735]	GC-content	45.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vibrio owensii LMG 25430 LMG 25430 NCBI: GCA_000400325.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio owensii LMG 25430 LMG 25430 NCBI: GCA_000400325.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.876	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	60.219	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.755	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	88.432	no

Availability in culture collections External links

[Ref.: #17983]

Culture collection no.

DSM 25291, CAIM 1816, LMG 25430

[Ref.: #86352]

SI-ID 362408

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio communis sp. nov., isolated from the marine animals Mussismilia hispida, Phyllogorgia dilatata, Palythoa caribaeorum, Palythoa variabilis and Litopenaeus vannamei.	Chimetto LA, Cleenwerck I, Alves N, Silva BS, Brocchi M, Willems A, De Vos P, Thompson FL	Int J Syst Evol Microbiol	10.1099/ijs.0.019729-0	2010	*

References

#17983

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25291

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29735

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26117 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86352

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID362408.1 )

#26117

IJSEM 362 2011 ( DOI 10.1099/ijs.0.019729-0 , PubMed 20305064 )

* These data were automatically processed and therefore are not curated

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Vibrio owensii LMG 25430 LMG 25430

Vibrio owensii LMG 25430 LMG 25430

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