Name: Vibrio owensii 74
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17261

Type strain:

Species: Vibrio owensii

Strain Designation: 74

Culture col. no.: DSM 2165, ATCC 25919, CCM 2580

Strain history: <- CCM <- P. Baumann; 74 (Beneckea neptuna)

NCBI tax ID(s): 1280000 (strain), 696485 (species)

SI-ID 265513

LMG 10948, ATCC 25919, CCM 2580, CCUG 4981, DSM 2165, NCIMB 1896, NCTC 11318, LMD 76.37, NCCB 76037, BCRC 13812, CCRC 13812

Other strains from Vibrio owensii

V. owensii DY05, DSM 23055, ACM 5300, JCM ... (type strain)
V. owensii R-40496, DSM 25291, CAIM 1816, ...

Section

Vibrio owensii 74 is a mesophilic, motile animal pathogen that was isolated from seawater enriched with glycerol and nitrate.

motile
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio owensii**
	Full Scientific Name (LPSN)	Vibrio owensii Cano-Gómez et al. 2010

Synonym

Vibrio communis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.966

[Ref.: #69480]	Motility	yes Confidence in %96.684

Information on culture and growth conditions Culture and growth conditions

[Ref.: #989]

Culture medium

SEA WATER AGAR (DSMZ Medium 246)

[Ref.: #989]

Culture medium growth

[Ref.: #989]

Culture medium link

Medium recipe at MediaDive

[Ref.: #989]

Culture medium composition

expand / minimize

[Ref.: #989]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #989]

Culture medium growth

[Ref.: #989]

Culture medium link

Medium recipe at MediaDive

[Ref.: #989]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #989]			growth	25 °C

[Ref.: #989]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.812

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #989]	23466	+	+	+	-	-	+	+	+	+	-	+	+	+/-	+	+	-	-	+	+	-	+
[Ref.: #989]	23455	+	+	-	-	-	+	+	+	+	-	+	+	+	+	+	-	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #989]	Sample type/isolated from	seawater enriched with glycerol and nitrate
[Ref.: #989]	Geographic location (country and/or sea, region)	Hawaii
[Ref.: #989]	Country	USA
[Ref.: #989]	Country ISO 3 Code	USA
[Ref.: #989]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU130473 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	169
Soil Samples	4
Animal Samples	159
Plant Samples	13
Total Samples	345

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #989]	Pathogenicity (animal)	yes
[Ref.: #989]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Vibrio harveyi ATCC:25919 16S ribosomal RNA gene, partial sequence	EU130473	1475	ENA	669 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio owensii ATCC 25919	GCA_000400225	scaffold	GenBank	1280000 tax ID	*
[Ref.: #66792]	Vibrio owensii ATCC 25919	1280000.3	wgs	PATRIC	1280000 tax ID	*
[Ref.: #66792]	Vibrio harveyi ATCC 25919	2582580862	draft	JGI IMG/M	1280000 tax ID	*

[Ref.: #989]	GC-content	46.44 mol%	sequence analysis
[Ref.: #989]	GC-content	46.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vibrio owensii ATCC 25919 PATRIC: 1280000.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio owensii ATCC 25919 ATCC 25919 NCBI: GCA_000400225.1
[Ref.: #69480]	motile	yes	91.594	no
[Ref.: #69480]	flagellated	yes	88.671	no
[Ref.: #69480]	gram-positive	no	98.557	no
[Ref.: #69480]	anaerobic	no	97.192	no
[Ref.: #69480]	aerobic	yes	86.178	no
[Ref.: #69480]	halophile	yes	50.941	no
[Ref.: #69480]	spore-forming	no	92.938	no
[Ref.: #69480]	thermophile	no	99.425	no
[Ref.: #69480]	glucose-util	yes	90.077	yes
[Ref.: #69480]	glucose-ferment	yes	88.657	no

Availability in culture collections External links

[Ref.: #989]

Culture collection no.

DSM 2165, ATCC 25919, CCM 2580

[Ref.: #86260]

SI-ID 265513

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences.	Urbanczyk H, Ogura Y, Hayashi T	Int J Syst Evol Microbiol	10.1099/ijs.0.051110-0	2013	*

References

#989	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2165

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86260

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265513.1 )

* These data were automatically processed and therefore are not curated

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Vibrio owensii ATCC 25919

Vibrio owensii ATCC 25919 ATCC 25919

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