Vibrio gallaecicus (DSM 23502, CECT 7244, LMG 24045)

Name: Vibrio gallaecicus (DSM 23502, CECT 7244, LMG 24045)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17347

Type strain

Strain Designation VB 8.9

Culture col. no. DSM 23502 CECT 7244 LMG 24045 VB 8.9

NCBI tax ID(s) 552386

Special Collections DSMZ

History <- CECT <- J. L. Romalde, Depart. Microbiol. & Parasitol., Univ. Santiago de Compostela; VB 8.9

Links

Vibrio gallaecicus VB 8.9 is a bacterium that was isolated from cultured Manila clams .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 363440

CAIM 1814,CECT 7244,LMG 24045,DSM 23502

@ref 20215

Last LPSN update 2026-02-09 11:22:12

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio gallaecicus

Full scientific name Vibrio gallaecicus Beaz-Hidalgo et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.3
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17244	NUTRIENT AGAR WITH NaCl (DSMZ Medium 101)		Medium recipe at MediaDive	Name: NUTRIENT AGAR or BROTH WITH NaCl (DSMZ Medium 101) Composition: NaCl 30.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
17244	MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)		Medium recipe at MediaDive	Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17244	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.2

Spore formation

@ref	Spore formation	Confidence
125439		98.9
125438		91.98

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
17244	cultured Manila clams (Ruditapes philippinarum)	Ruditapes philippinarum	Galicia	Spain	ESP	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17244	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434749v1 assembly for Vibrio gallaecicus CECT 7244	complete	GCA_024347495	552386.11	8048067245	552386	98.97
124043	ASM3040959v1 assembly for Vibrio gallaecicus CECT 7244	contig	GCA_030409595	552386.14	8114682697	552386	70.83
66792	ASM528182v1 assembly for Vibrio gallaecicus DSM 23502	contig	GCA_005281825	552386.3	2989788435	552386	66.94
66792	ASM1341688v1 assembly for Vibrio gallaecicus VB 8.9	contig	GCA_013416885	552386.4	8112025744	552386	66.94
124043	ASM4243006v1 assembly for Vibrio gallaecicus CECT 7244	scaffold	GCA_042430065			552386	63.05

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17244	Vibrio gallaecicus strain CECT 7244 16S ribosomal RNA gene, partial sequence	EU541605	1544		552386
124043	Vibrio gallaecicus strain CECT 7244 16S ribosomal RNA gene, partial sequence.	MT760268	1426		552386

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio gallaecicus DSM 23502
NCBI: GCA_005281825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	yes	73.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio gallaecicus CECT 7244
NCBI: GCA_024347495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	97.31	no
125438	aerobic	aerobicⓘ	no	64.87	no
125438	spore-forming	spore-formingⓘ	no	91.98	no
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	flagellated	motile2+ⓘ	yes	88.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio gallaecicus sp. nov. isolated from cultured clams in north-western Spain.	Beaz-Hidalgo R, Doce A, Pascual J, Toranzo AE, Romalde JL	Syst Appl Microbiol	10.1016/j.syapm.2008.12.002	2009

References

#17244	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23502
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio gallaecicus (DSM 23502, CECT 7244, LMG 24045)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024347495

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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