Name: Vibrio areninigrae J74
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17346

Type strain:

Species: Vibrio areninigrae

Strain Designation: J74

Culture col. no.: DSM 22054, JCM 14949, KCTC 22122, CCUG 57111

Strain history: <- SW Roh, KRIBB

NCBI tax ID(s): 472186 (species)

SI-ID 399028

DSM 22054

Section

Vibrio areninigrae J74 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from black sand.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio areninigrae**
	Full Scientific Name (LPSN)	Vibrio areninigrae Chang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32582]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #32582]	Cell length	02-03 µm

[Ref.: #32582]	Cell width	0.5-0.8 µm

[Ref.: #32582]	Cell shape	rod-shaped

[Ref.: #32582]	Motility	yes

[Ref.: #32582]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16110]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #16110]

Culture medium growth

[Ref.: #16110]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16110]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16110]	growth	28 °C
[Ref.: #32582]	growth	04-45 °C
[Ref.: #32582]	optimum	30 °C
[Ref.: #61200]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #16110]	Temperature range	mesophilic
[Ref.: #32582]	Temperature range	mesophilic
[Ref.: #61200]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32582]			optimum	05-10
[Ref.: #32582]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32582]	Oxygen tolerance	facultative anaerobe
[Ref.: #61200]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32582]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32582]		NaCl		growth	1-7.5	%
[Ref.: #32582]		NaCl		optimum	1-7.5	%

[Ref.: #32582]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #32582]	fructose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #32582]	glucose ChEBI	+	carbon source
[Ref.: #32582]	glycogen ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #32582]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #32582]	mannitol ChEBI	+	carbon source
[Ref.: #32582]	melibiose ChEBI	+	carbon source
[Ref.: #32582]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #32582]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #32582]	sucrose ChEBI	+	carbon source
[Ref.: #32582]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #32582]	tween 80 ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #32582]		indole ChEBI	yes
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #32582]		indole ChEBI	+
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #32582]	catalase	+	1.11.1.6
[Ref.: #32582]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #32582]	urease	+	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #16110]	23509	+	+	+	-	-	-	-	+	+	+	+	+	+	+	+	-	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16110]	Sample type/isolated from	black sand
[Ref.: #16110]	Geographic location (country and/or sea, region)	Jeju island, Soesoggak
[Ref.: #16110]	Country	Republic of Korea
[Ref.: #16110]	Country ISO 3 Code	KOR
[Ref.: #16110]	Continent	Asia

[Ref.: #61200]	Sample type/isolated from	Black sand
[Ref.: #61200]	Geographic location (country and/or sea, region)	Jeju Island,Soesoggak
[Ref.: #61200]	Country	Republic of Korea
[Ref.: #61200]	Country ISO 3 Code	KOR
[Ref.: #61200]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Black sand from Soesoggak
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From black sand
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16110]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16110]	Vibrio areninigrae strain J74 16S ribosomal RNA gene, partial sequence	EU143360	1420	ENA	472186 tax ID

Availability in culture collections External links

[Ref.: #16110]

Culture collection no.

DSM 22054, JCM 14949, KCTC 22122, CCUG 57111

[Ref.: #86346]	SI-ID 399028	*
[Ref.: #86347]	SI-ID 409664	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio areninigrae sp. nov., a marine bacterium isolated from black sand.	Chang HW, Roh SW, Kim KH, Nam YD, Jeon CO, Oh HM, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.65726-0	2008	*

References

#16110

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22054

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32582

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28797 (see below)

#61200 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57111
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68369

Automatically annotated from API 20NE .

#86346

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399028.1 )

#86347

#28797

IJSEM 1903 2008 ( DOI 10.1099/ijs.0.65726-0 , PubMed 18676477 )

* These data were automatically processed and therefore are not curated

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