Salinivibrio costicola DSM 11403 is an aerobe, Gram-negative, motile bacterium that produces toxins and was isolated from bacon curing brine.
toxin production Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order "Vibrionales" |
| Family Vibrionaceae |
| Genus Salinivibrio |
| Species Salinivibrio costicola |
| Full scientific name Salinivibrio costicola (Smith 1938) Mellado et al. 1996 |
| Synonyms (2) |
| BacDive ID | Other strains from Salinivibrio costicola (2) | Type strain |
|---|---|---|
| 134498 | S. costicola CIP 63.39, CCM 2811, NCIMB 1001 | |
| 143576 | S. costicola CCUG 20306 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 4352 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 4352 | SEA WATER AGAR (DSMZ Medium 246) | Medium recipe at MediaDive | Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water | ||
| 32825 | Marine agar (MA) | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |||
| 118766 | CIP Medium 13 | Medium recipe at CIP |
| 4352 | Compoundtetrodotoxin |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 118766 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 118766 | 17234 ChEBI | glucose | - | fermentation | |
| 118766 | 17234 ChEBI | glucose | - | degradation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 118766 | 17716 ChEBI | lactose | - | fermentation | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 118766 | 17632 ChEBI | nitrate | - | reduction | |
| 118766 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 118766 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118766 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 118766 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 118766 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 118766 | caseinase | - | 3.4.21.50 | |
| 118766 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 118766 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 118766 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 118766 | gelatinase | +/- | ||
| 118766 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 118766 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 118766 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118766 | ornithine decarboxylase | - | 4.1.1.17 | |
| 118766 | oxidase | + | ||
| 118766 | phenylalanine ammonia-lyase | + | 4.3.1.24 | |
| 118766 | protease | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 118766 | tryptophan deaminase | - | ||
| 118766 | tween esterase | - | ||
| 118766 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 47123 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118766 | not determinedn.d. | + | - | - | - | + | - | - | - | - | - | + | + | +/- | - | - | - | - | + | - | - | +/- | + | - | +/- | +/- | +/- | - | + | - | - | + | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | +/- | - |
Global distribution of 16S sequence X95527 (>99% sequence identity) for Salinivibrio from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | costicolaLMG11651 assembly for Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 | contig | 1269942 | 18.65 | ||||
| 67770 | Whole genome shotgun assembly for Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 | contig | 1269942 | 0 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence | AF412998 | 456 | 51367 | ||
| 20218 | Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence | AF412999 | 559 | 51367 | ||
| 20218 | Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence | AF413000 | 539 | 51367 | ||
| 20218 | Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence | AF413001 | 315 | 51367 | ||
| 20218 | Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence | AF413002 | 351 | 51367 | ||
| 20218 | V.costicola (ATCC 35508T) gene for 16S ribosomal RNA | X74699 | 1485 | 51367 | ||
| 20218 | S.costicola 16S ribosomal RNA (strain NCIMB 701-T) | X95527 | 1511 | 51367 | ||
| 20218 | Vibrio costicola 16S rRNA | D11200 | 198 | 51367 | ||
| 20218 | Vibrio costicola 16S rRNA | D11249 | 207 | 51367 | ||
| 20218 | Vibrio costicola 16S rRNA | D11298 | 191 | 51367 | ||
| 124043 | Salinivibrio costicola subsp. costicola partial 16S rRNA gene, strain CECT 4059 | LT722673 | 1526 | 149710 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 49.9 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 96.38 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 92.83 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 68.83 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.66 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 93.52 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 92.07 | no |
| 125438 | aerobic | aerobicⓘ | no | 61.09 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.49 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 88.55 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Emended description of Salinivibrio proteolyticus, including Salinivibrio costicola subsp. vallismortis and five new isolates. | Lopez-Hermoso C, de la Haba RR, Sanchez-Porro C, Ventosa A. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002716 | 2018 | |
| Isolation and Characterization of a Crude Oil-Tolerant Obligate Halophilic Bacterium from the Great Salt Lake of the United States of America. | Oakes J, Kuddus JN, Downs E, Oakey C, Davis K, Mohammad L, Whitely K, Hjelmen CE, Kuddus R. | Microorganisms | 10.3390/microorganisms13071568 | 2025 | ||
| Perchlorate-Reducing Bacteria from Hypersaline Soils of the Colombian Caribbean. | Acevedo-Barrios R, Bertel-Sevilla A, Alonso-Molina J, Olivero-Verbel J. | Int J Microbiol | 10.1155/2019/6981865 | 2019 | ||
| Phylogeny | Genome-level homology and phylogeny of Vibrionaceae (Gammaproteobacteria: Vibrionales) with three new complete genome sequences. | Dikow RB, Smith WL. | BMC Microbiol | 10.1186/1471-2180-13-80 | 2013 | |
| Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup. | Shen PS, Domek MJ, Sanz-Garcia E, Makaju A, Taylor RM, Hoggan R, Culumber MD, Oberg CJ, Breakwell DP, Prince JT, Belnap DM. | J Virol | 10.1128/jvi.00407-12 | 2012 | ||
| Biotechnology | Comparison of a fluorogenic assay with a conventional method for rapid detection of Vibrio parahaemolyticus in seafoods. | Venkateswaran K, Kurusu T, Satake M, Shinoda S. | Appl Environ Microbiol | 10.1128/aem.62.9.3516-3520.1996 | 1996 | |
| Enzymology | Sequence of a cloned pR72H fragment and its use for detection of Vibrio parahaemolyticus in shellfish with the PCR. | Lee CY, Pan SF, Chen CH. | Appl Environ Microbiol | 10.1128/aem.61.4.1311-1317.1995 | 1995 | |
| Molecular identification of microorganisms associated with the brine shrimp Artemia franciscana. | Riddle MR, Baxter BK, Avery BJ. | Aquat Biosyst | 10.1186/2046-9063-9-7 | 2013 | ||
| Biology of moderately halophilic aerobic bacteria. | Ventosa A, Nieto JJ, Oren A. | Microbiol Mol Biol Rev | 10.1128/mmbr.62.2.504-544.1998 | 1998 | ||
| Phylogeny | Analysis of 16S rRNA gene sequences of Vibrio costicola strains: description of Salinivibrio costicola gen. nov., comb. nov. | Mellado E, Moore ER, Nieto JJ, Ventosa A | Int J Syst Bacteriol | 10.1099/00207713-46-3-817 | 1996 | |
| Phylogeny | Salinivibrio siamensis sp. nov., from fermented fish (pla-ra) in Thailand. | Chamroensaksri N, Tanasupawat S, Akaracharanya A, Visessanguan W, Kudo T, Itoh T. | Int J Syst Evol Microbiol | 10.1099/ijs.0.001768-0 | 2009 |
| #4352 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11403 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #32825 | ; Curators of the CIP; |
| #47123 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20305 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118766 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103310 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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