Name: Vibrio costicola DSM 11403
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17241

Type strain:

Species: Vibrio costicola

Culture col. no.: DSM 11403, ATCC 33508, NCIMB 701, CCUG 20305, JCM 15095, BCRC 12910, CAIM 910, CCM 3575, CECT 4059, CGMCC 1.2322, CIP 103310, LMG 11651, LMG 6460, NCCB 77008

Strain history: CIP <- 1989, NCIMB <- 1960, M. Ingram <- N.E. Gibbons <- J. Robinson

NCBI tax ID(s): 51367 (species)

SI-ID 5062

LMG 11651, ATCC 33508, CCM 3575, CCRC 12910, CCUG 20305, CIP 103310, LMG 6460, NCIMB 701, NCMB 701, DSM 11403, LMD 77.8, CECT 4059, KCTC 2718, NCCB 77008, BCRC 12910, CGMCC 1.2322, JCM 15095

Special Collections

Section

Vibrio costicola DSM 11403 is an aerobe, Gram-negative bacterium that produces toxins and was isolated from bacon curing brine.

toxin production
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	Vibrio costicola
	Full Scientific Name (LPSN)	Vibrio costicola corrig. Smith 1938 (Approved Lists 1980)

	Synonym	Vibrio costicolus
	Synonym	**Salinivibrio costicola**

Information on morphological and physiological properties Morphology

[Ref.: #118766]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #118766]	Cell shape	rod-shaped

[Ref.: #118766]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4352]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #4352]

Culture medium growth

[Ref.: #4352]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4352]

Culture medium composition

expand / minimize

[Ref.: #4352]

Culture medium

SEA WATER AGAR (DSMZ Medium 246)

[Ref.: #4352]

Culture medium growth

[Ref.: #4352]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4352]

Culture medium composition

expand / minimize

[Ref.: #32825]

Culture medium

Marine agar (MA)

[Ref.: #32825]

Culture medium growth

[Ref.: #32825]

Culture medium composition

expand / minimize

[Ref.: #118766]

Culture medium

CIP Medium 13

[Ref.: #118766]

Culture medium growth

[Ref.: #118766]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4352]		growth	25 °C
[Ref.: #32825]		growth	25 °C
[Ref.: #47123]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #118766]		growth	15-37 °C
[Ref.: #118766]	no	growth	5 °C
[Ref.: #118766]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #47123]	Oxygen tolerance	aerobe
[Ref.: #118766]	Oxygen tolerance	facultative anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %92.067

[Ref.: #4352]

Name of produced compound

tetrodotoxin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #47123]		NaCl		growth	3-5	%
[Ref.: #118766]		NaCl		growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118766]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118766]	glucose ChEBI	-	fermentation
[Ref.: #118766]	glucose ChEBI	-	degradation
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118766]	lactose ChEBI	-	fermentation
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118766]	nitrate ChEBI	-	reduction
[Ref.: #118766]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118766]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #118766]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #118766]		acetoin ChEBI	+
[Ref.: #118766]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118766]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #118766]	amylase	-
[Ref.: #118766]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118766]	caseinase	-	3.4.21.50
[Ref.: #118766]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #118766]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #118766]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #118766]	gelatinase	+/-
[Ref.: #118766]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #118766]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118766]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118766]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118766]	oxidase	+
[Ref.: #118766]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #118766]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #118766]	tryptophan deaminase	-
[Ref.: #118766]	tween esterase	-
[Ref.: #118766]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #47123]

Fatty acid	Percentage	ECL
Unidentified	26.4	16.165
Unidentified	19.7	16.328
C17:0 iso 3OH	13.2	18.161
C16:1 ω7c	10	15.819
C16:0	5.7	16
Unidentified	5.5	12.268
C18:1 ω7c /12t/9t	5	17.824
Unidentified	3.5	14.283
Unidentified	3	12.679
C14:0	1.2	14
Unidentified	0.8	14.133
C16:1 ω11c	0.4	15.757
C15:0 ANTEISO	0.4	14.711
C19:0 CYCLO ω9c	0.4	18.87
Unidentified	0.3	13.731
unknown 12.486	0.3	12.486
C13:0 ISO 2OH	0.3	13.814
Unidentified	0.2	9.233
Unidentified	0.2	15.289
C18:0	0.2	18
C12:0	0.2	12

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #118766]	9243	not determinedn.d.	+	-	-	-	+	-	-	-	-	-	+	+	+/-	-	-	-	-	+	-	-	+/-	+	-	+/-	+/-	+/-	-	+	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	+/-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #118766]	390	not determinedn.d.	+	+	-	+	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118766]	7491	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4352]	Sample type/isolated from	bacon curing brine
[Ref.: #4352]	Country	Canada
[Ref.: #4352]	Country ISO 3 Code	CAN
[Ref.: #4352]	Continent	North America

[Ref.: #47123]	Sample type/isolated from	Bacon curing brine

[Ref.: #67770]	Sample type/isolated from	Cured meat

[Ref.: #118766]	Sample type/isolated from	Food, Bacon curing brine
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Meat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X95527 (>99% sequence identity) for Salinivibrio from Microbeatlas

Aquatic Samples	22
Soil Samples
Animal Samples	8
Plant Samples	9
Total Samples	39

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4352]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118766]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Salinivibrio costicola subsp. costicola partial 16S rRNA gene, strain CECT 4059	LT722673	1526	GenBank ENA	149710 tax ID	*
[Ref.: #20218]	V.costicola (ATCC 35508T) gene for 16S ribosomal RNA	X74699	1485	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	S.costicola 16S ribosomal RNA (strain NCIMB 701-T)	X95527	1511	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	Vibrio costicola 16S rRNA	D11200	198	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	Vibrio costicola 16S rRNA	D11249	207	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	Vibrio costicola 16S rRNA	D11298	191	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence	AF412998	456	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence	AF412999	559	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence	AF413000	539	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence	AF413001	315	GenBank ENA	51367 tax ID	*
[Ref.: #20218]	Salinivibrio costicola strain ATCC 33508 16S-23S ribosomal RNA intergenic spacer, partial sequence	AF413002	351	GenBank ENA	51367 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651	GCA_000565345	contig	GenBank ENA	1269942 tax ID
[Ref.: #67770]	Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651	GCA_000390145	contig	GenBank ENA	1269942 tax ID
[Ref.: #66792]	Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651	1269942.6	wgs	PATRIC	1269942 tax ID	*
[Ref.: #66792]	Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651	1269942.3	wgs	PATRIC	1269942 tax ID	*
[Ref.: #66792]	Salinivibrio costicola costicola ATCC 33508	2551306522	draft	JGI IMG/M	1269942 tax ID	*
[Ref.: #66792]	Salinivibrio costicola costicola ATCC 33508, LMG 11651	2579778798	draft	JGI IMG/M	1269942 tax ID	*

[Ref.: #67770]

GC-content

49.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 PATRIC: 1269942.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.521	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.067	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	61.088	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.486	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	88.549	no

Availability in culture collections External links

[Ref.: #4352]

Culture collection no.

DSM 11403, ATCC 33508, NCIMB 701, CCUG 20305, JCM 15095, BCRC 12910, CAIM 910, CCM 3575, CECT 4059, CGMCC 1.2322, CIP 103310, LMG 11651, LMG 6460, NCCB 77008

[Ref.: #86239]

SI-ID 5062

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Analysis of 16S rRNA gene sequences of Vibrio costicola strains: description of Salinivibrio costicola gen. nov., comb. nov.	Mellado E, Moore ER, Nieto JJ, Ventosa A	Int J Syst Bacteriol	10.1099/00207713-46-3-817	1996	*

References

#4352

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11403

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32825 ; Curators of the CIP;
#47123 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20305

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86239

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5062.1 )

#118766 Collection of Institut Pasteur ; Curators of the CIP; CIP 103310

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Search for species Salinivibrio costicola in external resources:
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Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651

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