Enterovibrio norvegicus R-3710 | Type strain | DSM 15893, LMG 19839, CCUG 47417, CAIM 430, CIP 108237 | BacDiveID:17216

Strain identifier

BacDive ID: 17216

Type strain:

Species: Enterovibrio norvegicus

Strain Designation: R-3710

Culture col. no.: DSM 15893, LMG 19839, CCUG 47417, CAIM 430, CIP 108237

Strain history: CIP <- 2004, CCUG <- 2003, LMG <- 2001, L. Huys, Ghent Univ. Ghent, Belgium: strain R-3710

NCBI tax ID(s): 1121869 (strain), 188144 (species)

SI-ID 97674

LMG 19839, CCUG 47417, CIP 108237, DSM 15893, CECT 7288

Section

Enterovibrio norvegicus R-3710 is an aerobe, mesophilic, motile bacterium that was isolated from gut of healthy turbot larvae.

motile
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Enterovibrio*
	Species	**Enterovibrio norvegicus**
	Full Scientific Name (LPSN)	Enterovibrio norvegicus Thompson et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #121352]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #121352]	Cell shape	oval-shaped

[Ref.: #121352]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.707

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

Marine agar (MA)

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #121352]

Culture medium

CIP Medium 13

[Ref.: #121352]

Culture medium growth

[Ref.: #121352]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #6171]			growth	28 °C
[Ref.: #36709]			growth	30 °C
[Ref.: #57681]			growth	22 °C
[Ref.: #121352]			growth	5-30 °C
[Ref.: #121352]		no	growth	37 °C
[Ref.: #121352]		no	growth	41 °C

[Ref.: #6171]	Temperature range	mesophilic
[Ref.: #36709]	Temperature range	mesophilic
[Ref.: #57681]	Temperature range	psychrophilic
[Ref.: #121352]	Temperature range	mesophilic
[Ref.: #121352]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57681]	Oxygen tolerance	aerobe
[Ref.: #121352]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.949

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #57681]		NaCl		growth	0-5	%
[Ref.: #121352]		NaCl		growth	2-4	%
[Ref.: #121352]		NaCl	no	growth	0	%
[Ref.: #121352]		NaCl	no	growth	6	%
[Ref.: #121352]		NaCl	no	growth	8	%
[Ref.: #121352]		NaCl	no	growth	10	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]		amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121352]		citrate ChEBI	-	carbon source
[Ref.: #68371]		D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121352]		esculin ChEBI	+	hydrolysis
[Ref.: #68371]		esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121352]		glucose ChEBI	+	fermentation
[Ref.: #68371]		glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121352]		lactose ChEBI	+	fermentation
[Ref.: #68371]		lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]		maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121352]		nitrate ChEBI	-	reduction
[Ref.: #121352]		nitrite ChEBI	-	reduction
[Ref.: #68371]		Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121352]		sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68371]		starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		xylitol ChEBI	-	builds acid from	* from API 50CH acid
		Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121352]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121352]		acetoin ChEBI	-
[Ref.: #121352]		glucose ChEBI		+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #121352]		alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121352]		amylase	-
[Ref.: #121352]		beta-galactosidase	+	3.2.1.23
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121352]		caseinase	+	3.4.21.50
[Ref.: #121352]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #121352]		gelatinase	+/-
[Ref.: #121352]		lecithinase	+
[Ref.: #68382]		leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #121352]		lipase	-
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #121352]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121352]		ornithine decarboxylase	+	4.1.1.17
[Ref.: #121352]		oxidase	+
[Ref.: #68382]		trypsin	-	3.4.21.4	* from API zym
[Ref.: #121352]		tryptophan deaminase	-
[Ref.: #121352]		tween esterase	+
[Ref.: #121352]		urease	-	3.5.1.5
[Ref.: #68382]		valine arylamidase	-		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121352]	11233	not determinedn.d.	+/-	-	-	+/-	+/-	-	-	-	-	-	+	+	+	-	-	-	-	+/-	-	-	-	+	-	+/-	+	+/-	+/-	-	+	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121352]	11013	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6171]	Sample type/isolated from	gut of healthy turbot larvae
[Ref.: #6171]	Geographic location (country and/or sea, region)	Austevoll
[Ref.: #6171]	Country	Norway
[Ref.: #6171]	Country ISO 3 Code	NOR
[Ref.: #6171]	Continent	Europe

[Ref.: #57681]	Sample type/isolated from	Turbot gut larvae,Scophthalmus maximus

[Ref.: #121352]	Sample type/isolated from	Animal, Turbot gut larvae, Scophtalmus maximus
[Ref.: #121352]	Country	Norway
[Ref.: #121352]	Country ISO 3 Code	NOR
[Ref.: #121352]	Continent	Europe
[Ref.: #121352]	Isolation date	1997
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

Global distribution of 16S sequence AJ316208 (>99% sequence identity) for Enterovibrio norvegicus subclade from Microbeatlas

Aquatic Samples	349
Soil Samples	3
Animal Samples	60
Plant Samples
Total Samples	412

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6171]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121352]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6171]	Enterovibrio norvegicus 16S rRNA gene, strain LMG 19839	AJ316208	1505	ENA	188144 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Enterovibrio norvegicus DSM 15893	GCA_900115495	scaffold	GenBank	1121869 tax ID	*
[Ref.: #66792]	Enterovibrio norvegicus DSM 15893	1121869.4	wgs	PATRIC	1121869 tax ID	*
[Ref.: #66792]	Enterovibrio norvegicus DSM 15893	2599185265	draft	JGI IMG/M	1121869 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Enterovibrio norvegicus DSM 15893 PATRIC: 1121869.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Enterovibrio norvegicus DSM 15893 DSM 15893 NCBI: GCA_900115495.1
[Ref.: #69480]	motile	yes	92.24	no
[Ref.: #69480]	flagellated	yes	88.804	no
[Ref.: #69480]	gram-positive	no	98.62	no
[Ref.: #69480]	anaerobic	no	97.768	yes
[Ref.: #69480]	aerobic	yes	88.87	yes
[Ref.: #69480]	halophile	yes	67.672	no
[Ref.: #69480]	spore-forming	no	94.43	no
[Ref.: #69480]	glucose-ferment	yes	85.909	no
[Ref.: #69480]	thermophile	no	99.596	yes
[Ref.: #69480]	glucose-util	yes	93.643	no

Availability in culture collections External links

Culture collection no.

DSM 15893, LMG 19839, CCUG 47417, CAIM 430, CIP 108237

SI-ID 97674

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Veronia nyctiphanis gen. nov., sp. nov., Isolated from the Stomach of the Euphausiid Nyctiphanes simplex (Hansen, 1911) in the Gulf of California, and Reclassification of Enterovibrio pacificus as Veronia pacifica comb. nov.	Gomez-Gil B, Gonzalez-Castillo A, Aguilar-Mendez MJ, Lopez-Cortes A, Gomez-Gutierrez J, Roque A, Lang E, Enciso-Ibarra J	Curr Microbiol	10.1007/s00284-021-02627-1	2021	*
Phylogeny	Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated with coral bleaching.	Thompson FL, Thompson CC, Naser S, Hoste B, Vandemeulebroecke K, Munn C, Bourne D, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63370-0	2005	*
Phylogeny	Enterovibrio norvegicus gen. nov., sp. nov., isolated from the gut of turbot (Scophthalmus maximus) larvae: a new member of the family Vibrionaceae.	Thompson FL, Hoste B, Thompson CC, Goris J, Gomez-Gil B, Huys L, De Vos P, Swings J	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2015	2002	*
	Characterization and Preliminary Application of a Novel Lipoxygenase from Enterovibrio norvegicus.	Zhang B, Chen M, Xia B, Lu Z, Khoo KS, Show PL, Lu F	Foods	10.3390/foods11182864	2022	*

References

#6171

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15893

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36709 ; Curators of the CIP;
#57681 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47417

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86215

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97674.1 )

#121352 Collection of Institut Pasteur ; Curators of the CIP; CIP 108237
* These data were automatically processed and therefore are not curated

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