Name: Negativicoccus succinicivorans DSM 21255
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17206

Type strain:

Species: Negativicoccus succinicivorans

Culture col. no.: DSM 21255, CCUG 56017, CIP 109806, ADV 07/08/06-B-1388, AIP 149.07

Strain history: CIP <- 2008, J.P. Carlier, Inst. Pasteur, Paris, France <- H. Jean-Pierre, Montpellier Hosp., Montpellier, France: strain AIP 149.07

NCBI tax ID(s): 620903 (species)

SI-ID 370213

CCUG 56017, CIP 109806, DSM 21255

Other strains from Negativicoccus succinicivorans

N. succinicivorans CIP 109807, ADV 12/01/04-B-1195, ...
N. succinicivorans CCUG 67084

Section

Negativicoccus succinicivorans DSM 21255 is an anaerobe, mesophilic, Gram-negative human pathogen that was isolated from human toe wound.

coccus-shaped
Gram-negative
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Negativicoccus*
	Species	**Negativicoccus succinicivorans**
	Full Scientific Name (LPSN)	Negativicoccus succinicivorans Marchandin et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29435]	Gram stain	negative
[Ref.: #123366]	Gram stain	negative

[Ref.: #29435]	Cell width	0.4 µm

[Ref.: #29435]	Cell shape	coccus-shaped
[Ref.: #123366]	Cell shape	coccus-shaped

[Ref.: #29435]	Motility	no
[Ref.: #123366]	Motility	no

[Ref.: #60825]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15594]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15594]

Culture medium growth

[Ref.: #15594]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15594]

Culture medium composition

expand / minimize

[Ref.: #15594]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #15594]

Culture medium growth

[Ref.: #15594]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15594]

Culture medium composition

expand / minimize

[Ref.: #33327]

Culture medium

MEDIUM 704 - for Acidaminococcaceae

[Ref.: #33327]

Culture medium growth

[Ref.: #33327]

Culture medium composition

expand / minimize

[Ref.: #123366]

Culture medium

CIP Medium 704

[Ref.: #123366]

Culture medium growth

[Ref.: #123366]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15594]	growth	37 °C
[Ref.: #33327]	growth	37 °C
[Ref.: #60825]	growth	37 °C

[Ref.: #15594]	Temperature range	mesophilic
[Ref.: #33327]	Temperature range	mesophilic
[Ref.: #60825]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15594]	Oxygen tolerance	anaerobe
[Ref.: #29435]	Oxygen tolerance	anaerobe
[Ref.: #60825]	Oxygen tolerance	anaerobe
[Ref.: #123366]	Oxygen tolerance	microaerophile

[Ref.: #29435]

Ability of spore formation

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123366]		nitrate ChEBI	-	reduction
[Ref.: #123366]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123366]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29435]	alkaline phosphatase	+	3.1.3.1
[Ref.: #123366]	catalase	-	1.11.1.6
[Ref.: #123366]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15594]	Sample type/isolated from	human toe wound
[Ref.: #15594]	Country	France
[Ref.: #15594]	Country ISO 3 Code	FRA
[Ref.: #15594]	Continent	Europe

[Ref.: #60825]	Sample type/isolated from	Human wound,toe
[Ref.: #60825]	Sampling date	2006-08-09
[Ref.: #60825]	Geographic location (country and/or sea, region)	Montpellier
[Ref.: #60825]	Country	France
[Ref.: #60825]	Country ISO 3 Code	FRA
[Ref.: #60825]	Continent	Europe

[Ref.: #123366]	Sample type/isolated from	Human, Toe
[Ref.: #123366]	Geographic location (country and/or sea, region)	Montpellier
[Ref.: #123366]	Country	France
[Ref.: #123366]	Country ISO 3 Code	FRA
[Ref.: #123366]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Limb	#Foot

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ715930 (>99% sequence identity) for Negativicoccus from Microbeatlas

Aquatic Samples	1038
Soil Samples	894
Animal Samples	46229
Plant Samples	180
Total Samples	48341

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15594]	Pathogenicity (human)	yes, in single cases
[Ref.: #15594]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123366]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15594]	Negativicoccus succinicivorans strain ADV 07/08/06-B-1388 16S ribosomal RNA gene, partial sequence	FJ715930	1401	ENA	620903 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Negativicoccus succinicivorans DSM 21255	GCA_014207605	scaffold	GenBank	620903 tax ID	*
[Ref.: #66792]	Negativicoccus succinicivorans strain DSM 21255	620903.10	wgs	PATRIC	620903 tax ID	*
[Ref.: #66792]	Negativicoccus succinicivorans DSM 21255	2861593547	draft	JGI IMG/M	620903 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Negativicoccus succinicivorans DSM 21255 NCBI: GCA_014207605.1
[Ref.: #69480]	flagellated	no	98.214	yes
[Ref.: #69480]	gram-positive	no	94.68	yes
[Ref.: #69480]	anaerobic	yes	98.264	yes
[Ref.: #69480]	aerobic	no	96.231	no
[Ref.: #69480]	halophile	no	70.107	no
[Ref.: #69480]	spore-forming	no	93.745	yes
[Ref.: #69480]	glucose-util	yes	57.568	no
[Ref.: #69480]	thermophile	no	97.115	yes
[Ref.: #69480]	motile	no	93.571	no
[Ref.: #69480]	glucose-ferment	no	65.72	no

Availability in culture collections External links

[Ref.: #15594]

Culture collection no.

DSM 21255, CCUG 56017, CIP 109806, ADV 07/08/06-B-1388, AIP 149.07

[Ref.: #86205]

SI-ID 370213

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Draft genome and description of Negativicoccus massiliensis strain Marseille-P2082, a new species isolated from the gut microbiota of an obese patient.	Togo AH, Diop A, Tall ML, Million M, Khelaifia S, Maraninchi M, Raoult D, Fournier PE, Dubourg G	Antonie Van Leeuwenhoek	10.1007/s10482-020-01414-5	2020	*
Phylogeny	Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes.	Marchandin H, Teyssier C, Campos J, Jean-Pierre H, Roger F, Gay B, Carlier JP, Jumas-Bilak E	Int J Syst Evol Microbiol	10.1099/ijs.0.013102-0	2009	*

References

#15594

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21255

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29435

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25841 (see below)

#33327 ; Curators of the CIP;
#60825 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56017

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86205

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370213.1 )

#123366 Collection of Institut Pasteur ; Curators of the CIP; CIP 109806

#25841

IJSEM 1271 2010 ( DOI 10.1099/ijs.0.013102-0 , PubMed 19667386 )

* These data were automatically processed and therefore are not curated

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