Name: Prosthecobacter dejongeii Fc1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17207

Type strain:

Species: Prosthecobacter dejongeii

Strain Designation: Fc1

Culture col. no.: DSM 12251, ATCC 27091

Strain history: <- ATCC <- J. T. Staley <- M. van Ert; Fc1

NCBI tax ID(s): 48465 (species)

SI-ID 110596

ATCC 27091, NCIMB 12777, DSM 12251, CCUG 46165

Other strains from Prosthecobacter dejongeii

P. dejongeii CCUG 46165

Section

Prosthecobacter dejongeii Fc1 is a mesophilic bacterium that was isolated from raw sewage.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Verrucomicrobiaceae*
	Genus	*Prosthecobacter*
	Species	**Prosthecobacter dejongeii**
	Full Scientific Name (LPSN)	Prosthecobacter dejongeii Hedlund et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #69480]	Motility	no Confidence in %90.842

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4653]

Culture medium

MMB MEDIUM (DSMZ Medium 628)

[Ref.: #4653]

Culture medium growth

[Ref.: #4653]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4653]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4653]			growth	26 °C

[Ref.: #4653]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4653]	Sample type/isolated from	raw sewage
[Ref.: #4653]	Geographic location (country and/or sea, region)	NC, Chapel Hill
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U60012 (>99% sequence identity) for Prosthecobacter dejongeii from Microbeatlas

Aquatic Samples	4
Soil Samples	2
Animal Samples	7
Plant Samples
Total Samples	13

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4653]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Prosthecobacter FC1 16S ribosomal RNA gene, partial sequence	U60012	1468	ENA	48465 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prosthecobacter dejongeii DSM 12251	GCA_014203045	scaffold	GenBank	48465 tax ID	*
[Ref.: #66792]	Prosthecobacter dejongeii strain DSM 12251	48465.7	wgs	PATRIC	48465 tax ID	*
[Ref.: #66792]	Prosthecobacter dejongeii DSM 12251	2861697045	draft	JGI IMG/M	48465 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prosthecobacter dejongeii DSM 12251 NCBI: GCA_014203045.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prosthecobacter dejongeii DSM 12251 NCBI: GCA_014203045.1
[Ref.: #69480]	flagellated	no	94.039	no
[Ref.: #69480]	gram-positive	no	96.506	no
[Ref.: #69480]	anaerobic	no	97.865	no
[Ref.: #69480]	aerobic	yes	89.926	no
[Ref.: #69480]	halophile	no	91.42	no
[Ref.: #69480]	spore-forming	no	94.697	no
[Ref.: #69480]	glucose-util	yes	85.776	no
[Ref.: #69480]	thermophile	no	98.987	yes
[Ref.: #69480]	motile	no	82.638	no
[Ref.: #69480]	glucose-ferment	no	87.2	no

Availability in culture collections External links

[Ref.: #4653]

Culture collection no.

DSM 12251, ATCC 27091

[Ref.: #86206]

SI-ID 110596

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prosthecobacter algae sp. nov., isolated from activated sludge using algal metabolites.	Lee J, Park B, Woo SG, Lee J, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.052787-0	2013	*

References

#4653

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12251

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86206

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID110596.1 )

* These data were automatically processed and therefore are not curated

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Prosthecobacter dejongeii DSM 12251

Prosthecobacter dejongeii DSM 12251

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