Name: Pelosinus fermentans R7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17204

Type strain:

Species: Pelosinus fermentans

Strain Designation: R7, 10787

Culture col. no.: DSM 17108, ATCC BAA-1133, CIP 109631

Strain history: CIP <- 2007, DSMZ <- E. S. Shelobolina, Russia: strain 10787

NCBI tax ID(s): 1122947 (strain), 365349 (species)

SI-ID 297292

ATCC BAA-1133, DSM 17108, CIP 109631

Section

Pelosinus fermentans R7 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from kaolin deposit Zhuravlinii Log.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Selenomonadales*
	Family	*Sporomusaceae*
	Genus	*Pelosinus*
	Species	**Pelosinus fermentans**
	Full Scientific Name (LPSN)	Pelosinus fermentans Shelobolina et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #119309]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.784

[Ref.: #119309]	Cell shape	rod-shaped

[Ref.: #119309]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.212

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6762]

Culture medium

SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)

[Ref.: #6762]

Culture medium growth

[Ref.: #6762]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6762]

Culture medium composition

expand / minimize

[Ref.: #37795]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #37795]

Culture medium growth

[Ref.: #37795]

Culture medium composition

expand / minimize

[Ref.: #119309]

Culture medium

CIP Medium 20

[Ref.: #119309]

Culture medium growth

[Ref.: #119309]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #6762]			growth	25 °C
[Ref.: #37795]			growth	25 °C

[Ref.: #6762]	Temperature range	mesophilic
[Ref.: #37795]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6762]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.188

[Ref.: #69481]	Ability of spore formation	yes Confidence in %99
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119309]		nitrate ChEBI	-	reduction
[Ref.: #119309]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119309]		indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #119309]		urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6762]	Sample type/isolated from	kaolin deposit Zhuravlinii Log
[Ref.: #6762]	Geographic location (country and/or sea, region)	Plast, Chelyabinsk region
[Ref.: #6762]	Country	Russia
[Ref.: #6762]	Country ISO 3 Code	RUS
[Ref.: #6762]	Continent	Asia

[Ref.: #119309]	Sample type/isolated from	Kaolin lenses
[Ref.: #119309]	Country	Russian Federation
[Ref.: #119309]	Country ISO 3 Code	RUS
[Ref.: #119309]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LK391731 (>99% sequence identity) for Pelosinus fermentans from Microbeatlas

Aquatic Samples	6344
Soil Samples	12100
Animal Samples	2930
Plant Samples	1999
Total Samples	23373

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6762]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119309]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6762]	Pelosinus fermentans DSM 17108 16S ribosomal RNA gene, partial sequence	DQ145536	1404	ENA	1122947 tax ID
[Ref.: #20218]	Pelosinus fermentans partial 16S rRNA gene, type strain DSM 17108T, clone 1	LK391729	1585	ENA	365349 tax ID	*
[Ref.: #20218]	Pelosinus fermentans partial 16S rRNA gene, type strain DSM 17108T, clone 2	LK391730	1706	ENA	365349 tax ID	*
[Ref.: #20218]	Pelosinus fermentans partial 16S rRNA gene, type strain DSM 17108T, clone 3	LK391731	1675	ENA	365349 tax ID	*
[Ref.: #20218]	Pelosinus fermentans DSM 17108 clone 73 16S ribosomal RNA gene, partial sequence	JF749997	1651	ENA	1122947 tax ID	*
[Ref.: #20218]	Pelosinus fermentans DSM 17108 clone 83 16S ribosomal RNA gene, partial sequence	JF749998	1651	ENA	1122947 tax ID	*
[Ref.: #20218]	Pelosinus fermentans DSM 17108 clone 78 16S ribosomal RNA gene, partial sequence	JF749999	1651	ENA	1122947 tax ID	*
[Ref.: #20218]	Pelosinus fermentans DSM 17108 clone 76 16S ribosomal RNA gene, partial sequence	JF750000	1550	ENA	1122947 tax ID	*
[Ref.: #20218]	Pelosinus fermentans DSM 17108 clone 77 16S ribosomal RNA gene, partial sequence	JF750001	1550	ENA	1122947 tax ID	*
[Ref.: #20218]	Pelosinus fermentans DSM 17108 clone 89 16S ribosomal RNA gene, partial sequence	JF750002	1550	ENA	1122947 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pelosinus fermentans R7, DSM 17108	GCA_900100555	contig	GenBank	365349 tax ID	*
[Ref.: #66792]	Pelosinus fermentans DSM 17108 R7	GCA_000271485	contig	GenBank	1122947 tax ID	*
[Ref.: #66792]	Pelosinus fermentans DSM 17108	1122947.3	wgs	PATRIC	1122947 tax ID	*
[Ref.: #66792]	Pelosinus fermentans strain R7, DSM 17108	365349.7	wgs	PATRIC	365349 tax ID	*
[Ref.: #66792]	Pelosinus fermentans R7	2529293099	draft	JGI IMG/M	1122947 tax ID	*

[Ref.: #6762]

GC-content

41 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pelosinus fermentans DSM 17108 PATRIC: 1122947.3
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pelosinus fermentans DSM 17108 PATRIC: 1122947.3
[Ref.: #69480]	motile	yes	90.152	no
[Ref.: #69480]	flagellated	no	51.2	no
[Ref.: #69480]	gram-positive	no	95.292	no
[Ref.: #69480]	anaerobic	yes	97.956	yes
[Ref.: #69480]	aerobic	no	97.733	yes
[Ref.: #69480]	halophile	no	96.428	no
[Ref.: #69480]	spore-forming	yes	87.057	no
[Ref.: #69480]	glucose-util	yes	80.833	no
[Ref.: #69480]	thermophile	no	98.555	yes
[Ref.: #69480]	glucose-ferment	no	74.611	no

Availability in culture collections External links

[Ref.: #6762]

Culture collection no.

DSM 17108, ATCC BAA-1133, CIP 109631

[Ref.: #86203]

SI-ID 297292

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.	Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, VanPraagh CG, Lovley DR	Int J Syst Evol Microbiol	10.1099/ijs.0.64221-0	2007	*
Enzymology	Characterization of a poly(butylene adipate-co-terephthalate)- hydrolyzing lipase from Pelosinus fermentans.	Biundo A, Hromic A, Pavkov-Keller T, Gruber K, Quartinello F, Haernvall K, Perz V, Arrell MS, Zinn M, Ribitsch D, Guebitz GM	Appl Microbiol Biotechnol	10.1007/s00253-015-7031-1	2016	*
Genetics	Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.	Brown SD, Podar M, Klingeman DM, Johnson CM, Yang ZK, Utturkar SM, Land ML, Mosher JJ, Hurt RA Jr, Phelps TJ, Palumbo AV, Arkin AP, Hazen TC, Elias DA	J Bacteriol	10.1128/JB.01174-12	2012	*
Phylogeny	Pelosinus defluvii sp. nov., isolated from chlorinated solvent-contaminated groundwater, emended description of the genus Pelosinus and transfer of Sporotalea propionica to Pelosinus propionicus comb. nov.	Moe WM, Stebbing RE, Rao JU, Bowman KS, Nobre MF, da Costa MS, Rainey FA	Int J Syst Evol Microbiol	10.1099/ijs.0.033753-0	2011	*

References

#6762

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17108

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37795 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86203

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297292.1 )

#119309 Collection of Institut Pasteur ; Curators of the CIP; CIP 109631
* These data were automatically processed and therefore are not curated

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Pelosinus fermentans DSM 17108

Pelosinus fermentans DSM 17108

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