Veillonella caviae (CCUG 54949, CIP 108004, DSM 20738)

Name: Veillonella caviae (CCUG 54949, CIP 108004, DSM 20738)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17170

Type strain

Strain Designation PV1

Culture col. no. CCUG 54949 CIP 108004 DSM 20738 ATCC 33540 PV1 1 more

NCBI tax ID(s) 248316

Special Collections DSMZ CCUG CIP

History <- ATCC <- M. Rogosa, PV1 CIP <- 2003, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10220 <- DSMZ <- ATCC <- M. Rogosa

Links

Veillonella caviae PV1 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from mouth of guinea pig.

Gram-negative ovoid-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 44962

ATCC 33540,DSM 20738,NCTC 12021,CIP 108004,CCUG 54949

@ref 20215

Last LPSN update 2026-02-09 11:22:08

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Veillonellales

Family Veillonellaceae

Genus Veillonella

Species Veillonella caviae

Full scientific name Veillonella caviae Mays et al. 1982

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	positive		91.7
125438	negative		90.665
117225	negative	ovoid-shaped

Colony morphology

@ref	Type of hemolysis	Incubation period
9048	gamma	1-2 days
60409		2 days
117225

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9048	VEILLONELLA MEDIUM (DSMZ Medium 136)	Medium recipe at MediaDive	Name: VEILLONELLA MEDIUM (DSMZ Medium 136) Composition: Na-(DL)-lactate 7.5 g/l Trypticase 5.0 g/l Yeast extract 3.0 g/l Glucose 1.0 g/l Na-thioglycolate 0.75 g/l Putrescine 0.003 g/l Resazurin 0.001 g/l Tween 80 Distilled water
9048	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
33869	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
117225	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9048	positive	growth	37	mesophilic
33869	positive	growth	37	mesophilic
60409	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
9048	anaerobe
60409	anaerobe
117225	anaerobe
125439	anaerobe	91.8

Spore formation

@ref	Spore formation	Confidence
125439		95.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
117225	17057 ChEBI	cellobiose	-	degradation
117225	17108 ChEBI	D-arabinose	-	degradation
117225	15824 ChEBI	D-fructose	+	degradation
117225	17634 ChEBI	D-glucose	+	degradation
117225	65327 ChEBI	D-xylose	-	degradation
117225	4853 ChEBI	esculin	-	hydrolysis
117225	17716 ChEBI	lactose	-	degradation
117225	17306 ChEBI	maltose	-	degradation
117225	17632 ChEBI	nitrate	+	reduction
117225	17632 ChEBI	nitrate	+	respiration
117225	16301 ChEBI	nitrite	-	reduction
117225	17814 ChEBI	salicin	-	degradation
117225	17992 ChEBI	sucrose	-	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117225	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
117225	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
117225	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
117225	caseinase	-	3.4.21.50
117225	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
117225	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
117225	gelatinase	-
117225	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
117225	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117225	oxidase	-
117225	protease	-
68382	trypsin	-	3.4.21.4	from API zym
117225	tween esterase	-
117225	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117225	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Oral cavity and airways	#Mouth

Isolation

@ref	Sample type
9048	mouth of guinea pig
60409	Guinea pig mouth
117225	Mouth of guinea pig

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9048	1	Risk group (German classification) According to TRBA 466
117225	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM399212v1 assembly for Veillonella caviae DSM 20738	contig	GCA_003992125	248316.3	2868209962	248316	64.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
9048	Veillonella caviae 16S ribosomal RNA gene, partial sequence	AY355140	1402		248316

GC content

9048

GC-content (mol%)39.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Veillonella caviae DSM 20738
NCBI: GCA_003992125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.70	no
125439	motility	BacteriaNetⓘ	no	79.10	no
125439	gram_stain	BacteriaNetⓘ	positive	91.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	91.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Veillonella caviae strain DSM 20738
PATRIC: 248316.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	90.67	no
125438	anaerobic	anaerobicⓘ	yes	83.35	yes
125438	spore-forming	spore-formingⓘ	no	84.41	no
125438	aerobic	aerobicⓘ	no	92.08	no
125438	thermophilic	thermophileⓘ	no	94.55	no
125438	flagellated	motile2+ⓘ	no	87.99	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Functional similarities between pigeon 'milk' and mammalian milk: induction of immune gene expression and modification of the microbiota.	Gillespie MJ, Stanley D, Chen H, Donald JA, Nicholas KR, Moore RJ, Crowley TM.	PLoS One	10.1371/journal.pone.0048363	2012
	Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA.	Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ, Dymock D, Wade WG.	Appl Environ Microbiol	10.1128/aem.64.2.795-799.1998	1998

References

#9048	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20738
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33869	; Curators of the CIP;
#60409	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54949
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#117225	Collection of Institut Pasteur ; Curators of the CIP; CIP 108004
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Veillonella caviae (CCUG 54949, CIP 108004, DSM 20738)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003992125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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