Name: Veillonella atypica KON
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17169

Type strain:

Species: Veillonella atypica

Strain Designation: KON

Culture col. no.: DSM 20739, ATCC 17744, CCUG 56974, KCTC 3696, NCTC 11830, CIP 107996, AIP 10216

Strain history: CIP <- 2003, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10216

NCBI tax ID(s): 1128111 (strain), 39777 (species)

SI-ID 36713

ATCC 17744, DSM 20739, KCTC 3696, NCTC 11830, CIP 107996, CCUG 56974

Other strains from Veillonella atypica

V. atypica UW 221, DSM 1399, ATCC 14894
V. atypica CCUG 39829
V. atypica CCUG 59486
V. atypica CCUG 65231

Section

Veillonella atypica KON is an anaerobe, mesophilic, Gram-negative human pathogen that was isolated from human mouth.

coccus-shaped
Gram-negative
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Veillonella*
	Species	**Veillonella atypica**
	Full Scientific Name (LPSN)	Veillonella atypica (Rogosa 1965) Mays et al. 1982

Synonym

Veillonella parvula subsp. atypica

Information on morphological and physiological properties Morphology

[Ref.: #116547]	Gram stain	negative

[Ref.: #116547]	Cell shape	coccus-shaped

[Ref.: #116547]	Motility	no

[Ref.: #9049]	Incubation period	2-3 days

[Ref.: #61153]	Incubation period	3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9049]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #9049]

Culture medium growth

[Ref.: #9049]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9049]

Culture medium composition

expand / minimize

[Ref.: #9049]

Culture medium

VEILLONELLA MEDIUM (DSMZ Medium 136)

[Ref.: #9049]

Culture medium growth

[Ref.: #9049]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9049]

Culture medium composition

expand / minimize

[Ref.: #41931]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #41931]

Culture medium growth

[Ref.: #41931]

Culture medium composition

expand / minimize

[Ref.: #116547]

Culture medium

CIP Medium 20

[Ref.: #116547]

Culture medium growth

[Ref.: #116547]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9049]	growth	37 °C
[Ref.: #41931]	growth	37 °C
[Ref.: #61153]	growth	37 °C

[Ref.: #9049]	Temperature range	mesophilic
[Ref.: #41931]	Temperature range	mesophilic
[Ref.: #61153]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9049]	Oxygen tolerance	anaerobe
[Ref.: #61153]	Oxygen tolerance	anaerobe
[Ref.: #116547]	Oxygen tolerance	anaerobe

[Ref.: #9049]	Murein short key	A31
[Ref.: #9049]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #116547]	esculin ChEBI	-	hydrolysis
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #116547]	nitrate ChEBI	+	reduction
[Ref.: #116547]	nitrate ChEBI	+	respiration
[Ref.: #68380]	nitrate ChEBI	+	reduction	* from API rID32A
[Ref.: #116547]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #116547]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A, API zym
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A, API zym
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A, API zym
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116547]	amylase	-
[Ref.: #116547]	beta-galactosidase	-	3.2.1.23
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A, API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A, API zym
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A, API zym
[Ref.: #116547]	caseinase	-	3.4.21.50
[Ref.: #116547]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116547]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #116547]	gelatinase	-
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #116547]	lecithinase	-
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A, API zym
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #116547]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116547]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #116547]	protease	-
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #116547]	tween esterase	-
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #116547]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #9049]	12912	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-
[Ref.: #9049]	12372	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116547]	10805	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9049]	Sample type/isolated from	human mouth

[Ref.: #61153]	Sample type/isolated from	Human mouth

[Ref.: #116547]	Sample type/isolated from	Human, Mouth
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Mouth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X84007 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	133
Soil Samples	23
Animal Samples	12917
Plant Samples	22
Total Samples	13095

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9049]	Pathogenicity (human)	yes, in single cases
[Ref.: #9049]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116547]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9049]	V.atypica 16S rRNA gene	X84007	1513	ENA	1128111 tax ID
[Ref.: #20218]	Veillonella atypica strain ATCC 17744 16S ribosomal RNA gene, partial sequence	AY995768	1498	ENA	1128111 tax ID	*
[Ref.: #20218]	Veillonella atypica strain DSM 20739 16S ribosomal RNA gene, partial sequence	HQ012015	937	ENA	1128111 tax ID	*
[Ref.: #20218]	Veillonella atypica 16S ribosomal RNA gene, partial sequence	AF439641	1400	ENA	1128111 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Veillonella atypica KON, ATCC 17744	2529292891	draft	JGI IMG/M	1128111 tax ID	*
[Ref.: #66792]	Veillonella atypica KON ATCC 17744	GCA_002959915	contig	GenBank	1128111 tax ID	*
[Ref.: #66792]	Veillonella atypica KON	GCA_000318355	scaffold	GenBank	1128111 tax ID	*
[Ref.: #66792]	Veillonella atypica KON	1128111.23	wgs	PATRIC	1128111 tax ID	*
[Ref.: #66792]	Veillonella atypica KON	1128111.3	wgs	PATRIC	1128111 tax ID	*
[Ref.: #66792]	Veillonella atypica KON strain ATCC 17744	1128111.52	wgs	PATRIC	1128111 tax ID	*

[Ref.: #9049]

GC-content

38.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Veillonella atypica KON KON NCBI: GCA_000318355.1
[Ref.: #69480]	motile	no	91.53	no
[Ref.: #69480]	flagellated	no	96.991	no
[Ref.: #69480]	gram-positive	no	93.429	no
[Ref.: #69480]	anaerobic	yes	99.999	yes
[Ref.: #69480]	aerobic	no	98.533	yes
[Ref.: #69480]	halophile	no	85.425	no
[Ref.: #69480]	spore-forming	no	88.489	no
[Ref.: #69480]	thermophile	no	96.649	yes
[Ref.: #69480]	glucose-util	yes	56.941	no
[Ref.: #69480]	glucose-ferment	no	53.494	no
[Ref.: #69480]	motile	no	91.53	no
[Ref.: #69480]	flagellated	no	96.991	no
[Ref.: #69480]	gram-positive	no	93.429	no
[Ref.: #69480]	anaerobic	yes	99.999	yes
[Ref.: #69480]	aerobic	no	98.533	yes
[Ref.: #69480]	halophile	no	85.425	no
[Ref.: #69480]	spore-forming	no	88.489	no
[Ref.: #69480]	thermophile	no	96.649	yes
[Ref.: #69480]	glucose-util	yes	56.941	no
[Ref.: #69480]	glucose-ferment	no	53.494	no

Availability in culture collections External links

[Ref.: #9049]

Culture collection no.

DSM 20739, ATCC 17744, CCUG 56974, KCTC 3696, NCTC 11830, CIP 107996, AIP 10216

[Ref.: #86168]

SI-ID 36713

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Treponema denticola outer membrane enhances the phagocytosis of collagen-coated beads by gingival fibroblasts.	Battikhi T, Lee W, McCulloch CA, Ellen RP	Infect Immun	10.1128/IAI.67.3.1220-1226.1999	1999	*

References

#9049

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20739

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41931 ; Curators of the CIP;
#61153 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56974

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86168

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36713.1 )

#116547 Collection of Institut Pasteur ; Curators of the CIP; CIP 107996
* These data were automatically processed and therefore are not curated

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Veillonella atypica KON KON

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