Tsukamurella tyrosinosolvens (DSM 45557, JCM 15482, KCCM 42885)

Name: Tsukamurella tyrosinosolvens (DSM 45557, JCM 15482, KCCM 42885)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17109

Type strain

Strain Designation Y2

Culture col. no. DSM 45557 JCM 15482 KCCM 42885 Y2

NCBI tax ID(s) 57704

Special Collections DSMZ JCM Literature strains

History <- JCM <- Y. M. Kim; Y2 Y. M. Kim Y2.

Links

Tsukamurella tyrosinosolvens Y2 is an aerobe, Gram-positive bacterium that was isolated from subsurface soil from the side of a busy road at Yonsei University.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404335

JCM 15482,DSM 45557

@ref 20215

Last LPSN update 2026-02-09 11:22:08

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Tsukamurellaceae

Genus Tsukamurella

Species Tsukamurella tyrosinosolvens

Full scientific name Tsukamurella tyrosinosolvens Yassin et al. 1997

Synonyms (1)

Tsukamurella carboxydivorans

BacDive ID	Other strains from **Tsukamurella tyrosinosolvens** (8)	Type strain
17101	T. tyrosinosolvens DSM 44234, CCUG 38499, CIP 106771, JCM 10112, ... (type strain)
17102	T. tyrosinosolvens DSM 44316
17103	T. tyrosinosolvens 5297/95, DSM 44330, IMMIB D-1411
17104	T. tyrosinosolvens 185-95, D, DSM 44370
139836	T. tyrosinosolvens MH-1, DSM 105033
152721	T. tyrosinosolvens CCUG 47473
154098	T. tyrosinosolvens CCUG 52355
154960	T. tyrosinosolvens CCUG 55875

Morphology

Cell morphology

@ref	Gram stain	Confidence
29089	positive
125438		91.1
125438	positive	91.83
125439	positive	97

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17643	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17643	positive	growth	28
29089	positive	growth	10-45
29089	positive	optimum	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29089	aerobe
125439	obligate aerobe	92.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29089	NaCl	positive	growth	0-6 %
29089	NaCl	positive	optimum	3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29089	22599 ChEBI	arabinose	+	carbon source
29089	17057 ChEBI	cellobiose	+	carbon source
29089	28757 ChEBI	fructose	+	carbon source
29089	17306 ChEBI	maltose	+	carbon source
29089	29864 ChEBI	mannitol	+	carbon source
29089	33942 ChEBI	ribose	+	carbon source
29089	30911 ChEBI	sorbitol	+	carbon source
29089	16199 ChEBI	urea	+	carbon source
29089	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29089	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17643	subsurface soil (10cm depth) from the side of a busy road at Yonsei University	Seoul	Republic of Korea	KOR	Asia
67770	Subsurface soil (10 cm in depth) from the side of a busy road at Yonsei Univ.	Seoul	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU521689 (>99% sequence identity) for Tsukamurella from Microbeatlas

Aquatic Samples	2978
Soil Samples	3431
Animal Samples	5160
Plant Samples	790
Total Samples	12359

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17643	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM157522v1 assembly for Tsukamurella tyrosinosolvens JCM 15482	contig	GCA_001575225	57704.14	2700989554	57704	72.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17643	Tsukamurella carboxydivorans strain Y2 16S ribosomal RNA gene, partial sequence	EU521689	1512		57704
124043	Tsukamurella tyrosinosolvens strain JCM 15482 16S ribosomal RNA gene, partial sequence.	KX924546	1221		57704

GC content

@ref	GC-content (mol%)	Method
17643	77	high performance liquid chromatography (HPLC)
29089	77
17643	71.2	sequence analysis
67770	71	genome sequence analysis
67770	71.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tsukamurella tyrosinosolvens JCM 15482
NCBI: GCA_001575225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.80	no
125439	motility	BacteriaNetⓘ	no	60.60	no
125439	gram_stain	BacteriaNetⓘ	positive	97.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tsukamurella tyrosinosolvens strain JCM 15482
PATRIC: 57704.14

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.83	yes
125438	anaerobic	anaerobicⓘ	no	98.13	yes
125438	spore-forming	spore-formingⓘ	no	53.16	no
125438	aerobic	aerobicⓘ	yes	89.64	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	91.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Catheter-related bloodstream infection caused by Tsukamurella tyrosinosolvens identified by secA1sequencing in an immunocompromised child: a case report.	Mizuno S, Tsukamura Y, Nishio S, Ishida T, Hasegawa D, Kosaka Y, Ooka T, Nishi J, Kasai M.	Ann Clin Microbiol Antimicrob	10.1186/s12941-023-00651-6	2023
Enzymology	MALDI-TOF MS for identification of Tsukamurella species: Tsukamurella tyrosinosolvens as the predominant species associated with ocular infections.	Teng JLL, Tang Y, Wong SSY, Fong JYH, Zhao Z, Wong CP, Chen JHK, Ngan AHY, Wu AKL, Fung KSC, Que TL, Lau SKP, Woo PCY.	Emerg Microbes Infect	10.1038/s41426-018-0083-4	2018
Genetics	Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era.	Teng JL, Tang Y, Huang Y, Guo FB, Wei W, Chen JH, Wong SS, Lau SK, Woo PC.	Front Microbiol	10.3389/fmicb.2016.01137	2016
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Tsukamurella carboxydivorans sp. nov., a carbon monoxide-oxidizing actinomycete.	Park SW, Kim SM, Park ST, Kim YM	Int J Syst Evol Microbiol	10.1099/ijs.0.005959-0	2009

References

#17643	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45557
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25518	IJSEM 1541 2009 ( DOI 10.1099/ijs.0.005959-0 , PubMed 19502350 )
#29089	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25518
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tsukamurella tyrosinosolvens (DSM 45557, JCM 15482, KCCM 42885)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001575225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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