Name: Leucothrix mucor 1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17078

Type strain:

Species: Leucothrix mucor

Strain Designation: 1

Culture col. no.: DSM 2157, ATCC 25107, Le m9

Strain history: <- H. Reichenbach, Le m9 <- ATCC <- T.D. Brock, strain 1

NCBI tax ID(s): 998674 (strain), 45248 (species)

SI-ID 38356

ATCC 25107, NCMB 2222, NCIMB 2222, CECT 5016, KCTC 2451, NCIB 2222, KCTC 12450, DSM 2157

Other strains from Leucothrix mucor

L. mucor DSM 621, ATCC 27891

Section

Leucothrix mucor 1 is a mesophilic, Gram-negative bacterium that was isolated from seaweed.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Leucotrichaceae*
	Genus	*Leucothrix*
	Species	**Leucothrix mucor**
	Full Scientific Name (LPSN)	Leucothrix mucor Örsted 1844 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #983]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #983]

Culture medium growth

[Ref.: #983]

Culture medium link

Medium recipe at MediaDive

[Ref.: #983]

Culture medium composition

expand / minimize

[Ref.: #983]

Culture medium

LEUCOTHRIX MEDIUM (DSMZ Medium 79)

[Ref.: #983]

Culture medium growth

[Ref.: #983]

Culture medium link

Medium recipe at MediaDive

[Ref.: #983]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #983]			growth	25 °C
[Ref.: #983]			growth	20 °C

[Ref.: #983]	Temperature range	mesophilic
[Ref.: #983]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.966

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #983]	Sample type/isolated from	seaweed
[Ref.: #983]	Country	USA
[Ref.: #983]	Country ISO 3 Code	USA
[Ref.: #983]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Aquatic plant
#Environmental	#Aquatic	-
#Host	#Algae	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ897925 (>99% sequence identity) for Leucothrix mucor subclade from Microbeatlas

Aquatic Samples	3982
Soil Samples	75
Animal Samples	320
Plant Samples	8
Total Samples	4385

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #983]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Leucothrix mucor strain ATCC 25107 16S ribosomal RNA gene, partial sequence	HQ897925	1406	ENA	45248 tax ID	*
[Ref.: #20218]	L.mucor 16S rRNA gene	X87277	1516	ENA	998674 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leucothrix mucor DSM 2157	GCA_000419525	contig	GenBank	998674 tax ID	*
[Ref.: #66792]	Leucothrix mucor DSM 2157	998674.3	wgs	PATRIC	998674 tax ID	*
[Ref.: #66792]	Leucothrix mucor DSM 2157	2517093012	draft	JGI IMG/M	998674 tax ID	*

[Ref.: #983]

GC-content

49.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leucothrix mucor DSM 2157 PATRIC: 998674.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leucothrix mucor DSM 2157 PATRIC: 998674.3
[Ref.: #69480]	motile	no	87.357	no
[Ref.: #69480]	flagellated	no	83.428	no
[Ref.: #69480]	gram-positive	no	98.566	no
[Ref.: #69480]	anaerobic	no	97.719	no
[Ref.: #69480]	halophile	no	56.482	no
[Ref.: #69480]	spore-forming	no	95.085	no
[Ref.: #69480]	thermophile	no	99.039	yes
[Ref.: #69480]	glucose-util	yes	88.49	no
[Ref.: #69480]	aerobic	yes	85.977	no
[Ref.: #69480]	glucose-ferment	no	83.861	no

Availability in culture collections External links

[Ref.: #983]

Culture collection no.

DSM 2157, ATCC 25107, Le m9

[Ref.: #86078]

SI-ID 38356

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucothrix sargassi sp. nov., isolated from a marine alga [Sargassum natans (L.) Gaillon].	Liu T, Zhang Y, Zhang X, Zhou L, Meng C, Zhou C, Jing C, Zhu W, Wang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003694	2019	*
Phylogeny	Leucothrix pacifica sp. nov., isolated from seawater, and emended description of the genus Leucothrix.	Zhang Z, Gao X, Wang L, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.000270	2015	*
Phylogeny	Cocleimonas flava gen. nov., sp. nov., a gammaproteobacterium isolated from sand snail (Umbonium costatum).	Tanaka N, Romanenko LA, Iino T, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.020263-0	2010	*

References

#983	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2157

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86078

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38356.1 )

* These data were automatically processed and therefore are not curated

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Leucothrix mucor DSM 2157

Leucothrix mucor DSM 2157

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