Name: Thiothrix nivea JP2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17079

Type strain:

Species: Thiothrix nivea

Strain Designation: JP2

Culture col. no.: DSM 5205, ATCC 35100

Strain history: <- J.M. Larkin, JP2

NCBI tax ID(s): 870187 (strain), 1031 (species)

SI-ID 47903

DSM 5205, ATCC 35100, ATCC 31500

Section

Thiothrix nivea JP2 is a mesophilic, Gram-negative bacterium of the family Leucotrichaceae.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Leucotrichaceae*
	Genus	*Thiothrix*
	Species	**Thiothrix nivea**
	Full Scientific Name (LPSN)	Thiothrix nivea (Rabenhorst 1865) Winogradsky 1888 (Approved Lists 1980)

Synonym

"Beggiatoa nivea"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1955]

Culture medium

THIOTHRIX MEDIUM (DSMZ Medium 573)

[Ref.: #1955]

Culture medium growth

[Ref.: #1955]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1955]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1955]			growth	25 °C

[Ref.: #1955]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.872

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence HQ823668 (>99% sequence identity) for Thiothrix nivea subclade from Microbeatlas

Aquatic Samples	1025
Soil Samples	108
Animal Samples	245
Plant Samples	70
Total Samples	1448

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1955]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thiothrix nivea (JP2) 16S rRNA sequence	M79435	323	ENA	870187 tax ID	*
[Ref.: #20218]	Thiothrix nivea (JP2) 16S rRNA sequence	M79436	287	ENA	870187 tax ID	*
[Ref.: #20218]	Thiothrix nivea (JP2) 16S rRNA sequence	M79437	421	ENA	870187 tax ID	*
[Ref.: #20218]	Thiothrix nivea DSM 5205 16S ribosomal RNA gene, partial sequence	HQ823668	1399	ENA	870187 tax ID	*
[Ref.: #20218]	Thiothrix nivea 16S ribosomal RNA (16S rRNA) gene, partial sequence	L40993	1427	ENA	870187 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thiothrix nivea DSM 5205	GCA_000260135	scaffold	GenBank	870187 tax ID	*
[Ref.: #66792]	Thiothrix nivea DSM 5205	870187.4	wgs	PATRIC	870187 tax ID	*
[Ref.: #66792]	Thiothrix nivea JP2, DSM 5205	2506520049	draft	JGI IMG/M	870187 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thiothrix nivea DSM 5205 DSM 5205 NCBI: GCA_000260135.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thiothrix nivea DSM 5205 DSM 5205 NCBI: GCA_000260135.1
[Ref.: #69480]	motile	no	72.783	no
[Ref.: #69480]	flagellated	no	80.494	no
[Ref.: #69480]	gram-positive	no	99.329	no
[Ref.: #69480]	anaerobic	no	90.769	no
[Ref.: #69480]	aerobic	no	50	no
[Ref.: #69480]	halophile	no	90.558	no
[Ref.: #69480]	spore-forming	no	90.816	no
[Ref.: #69480]	glucose-util	yes	60.054	no
[Ref.: #69480]	glucose-ferment	no	87.868	no
[Ref.: #69480]	thermophile	no	98.808	no

Availability in culture collections External links

[Ref.: #1955]

Culture collection no.

DSM 5205, ATCC 35100

[Ref.: #86079]

SI-ID 47903

References

#1955

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5205

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86079

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47903.1 )

* These data were automatically processed and therefore are not curated

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Thiothrix nivea DSM 5205 DSM 5205

Thiothrix nivea DSM 5205 DSM 5205

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