Strain identifier

BacDive ID: 17068

Type strain: Yes

Species: Thermotoga petrophila

Strain Designation: RKU-1

Culture col. no.: DSM 13995, JCM 10881, ATCC BAA 488

Strain history: T. Maruyama RKU-1.

NCBI tax ID(s): 93929 (species)

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Thermotoga petrophila RKU-1 is an anaerobe, heterotroph, hyperthermophilic bacterium that was isolated from production fluid of an oil reservoir storage tank.

  1. rod-shaped
  2. anaerobe
  3. heterotroph
  4. hyperthermophilic
  5. 16S sequence
  6. Bacteria
  7. genome sequence
  • Availability in culture collections External linksarrow_down
  • [Ref.: #5208] Culture collection no. DSM 13995, JCM 10881, ATCC BAA 488
    [Ref.: #20218] Associated Passport(s) in StrainInfo 163896, 163897
    Literature: Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries.
    Titlearrow to sort Authorsarrow to sort Journalarrow to sort DOIarrow to sort Yeararrow to sort Mesharrow to sort Topicarrow to sort Topic2arrow to sort
    Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan. Takahata Y, Nishijima M, Hoaki T, Maruyama T Int J Syst Evol Microbiol 10.1099/00207713-51-5-1901 2001 Anaerobiosis, Bacteria/*classification/genetics/*growth & development/isolation & purification/ultrastructure, DNA, Ribosomal/analysis, Genotype, Japan, Microscopy, Electron, Molecular Sequence Data, Petroleum/*microbiology, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Temperature Phylogeny Genetics *
    Cloning, expression, purification, crystallization and preliminary X-ray diffraction studies of the catalytic domain of a hyperthermostable endo-1,4-beta-D-mannanase from Thermotoga petrophila RKU-1. Santos CR, Squina FM, Navarro AM, Ruller R, Prade R, Murakami MT Acta Crystallogr Sect F Struct Biol Cryst Commun 10.1107/S1744309110029131 2010 *Catalytic Domain, Cloning, Molecular, Crystallization, Crystallography, X-Ray, Enzyme Stability, Gene Expression, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*enzymology, Mannosidases/*chemistry/genetics/isolation & purification Enzymology Phylogeny *
    Functional and biophysical characterization of a hyperthermostable GH51 alpha-L-arabinofuranosidase from Thermotoga petrophila. dos Santos CR, Squina FM, Navarro AM, Oldiges DP, Paes Leme AF, Ruller R, Mort AJ, Prade R, Murakami MT Biotechnol Lett 10.1007/s10529-010-0409-3 2010 Arabinose/metabolism, Bacteria/*enzymology, Circular Dichroism, Cloning, Molecular, Crystallization, DNA, Bacterial/chemistry/genetics, Enzyme Stability, Gene Expression, Glycoside Hydrolases/chemistry/*genetics/isolation & purification/*metabolism, Hot Temperature, Hydrogen-Ion Concentration, Molecular Sequence Data, Protein Conformation, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Sequence Analysis, DNA, Substrate Specificity Enzymology Metabolism *
    Thermal-induced conformational changes in the product release area drive the enzymatic activity of xylanases 10B: Crystal structure, conformational stability and functional characterization of the xylanase 10B from Thermotoga petrophila RKU-1. Santos CR, Meza AN, Hoffmam ZB, Silva JC, Alvarez TM, Ruller R, Giesel GM, Verli H, Squina FM, Prade RA, Murakami MT Biochem Biophys Res Commun 10.1016/j.bbrc.2010.11.010 2010 Bacteria/*enzymology, Binding Sites, Crystallography, X-Ray, Disaccharides/biosynthesis, Endo-1,4-beta Xylanases/*chemistry/genetics/isolation & purification, Enzyme Stability, *Hot Temperature, Protein Conformation, Protein Structure, Secondary Enzymology Stress *
    Structure of a novel thermostable GH51 alpha-L-arabinofuranosidase from Thermotoga petrophila RKU-1. Souza TA, Santos CR, Souza AR, Oldiges DP, Ruller R, Prade RA, Squina FM, Murakami MT Protein Sci 10.1002/pro.693 2011 Bacteria/*enzymology, Bacterial Proteins/*chemistry/*metabolism, Enzyme Stability, Glycoside Hydrolases/*chemistry/*metabolism, Molecular Sequence Data, Protein Structure, Secondary, Protein Structure, Tertiary, Substrate Specificity, Temperature Enzymology Metabolism *
    Cloning, characterization and molecular docking of a highly thermostable beta-1,4-glucosidase from Thermotoga petrophila. Haq IU, Khan MA, Muneer B, Hussain Z, Afzal S, Majeed S, Rashid N, Javed MM, Ahmad I Biotechnol Lett 10.1007/s10529-012-0953-0 2012 Bacteria, Anaerobic/*enzymology/genetics, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Escherichia coli/genetics, Glucan 1,4-beta-Glucosidase/chemistry/*genetics/isolation & purification/*metabolism, Glucosides/metabolism, Hydrolysis, Kinetics, Models, Molecular, Molecular Dynamics Simulation, Molecular Weight, Polymerase Chain Reaction, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Substrate Specificity Enzymology Metabolism *
    Overexpression and characterization of a Ca(2+) activated thermostable beta-glucosidase with high ginsenoside Rb1 to ginsenoside 20(S)-Rg3 bioconversion productivity. Xie J, Zhao D, Zhao L, Pei J, Xiao W, Ding G, Wang Z J Ind Microbiol Biotechnol 10.1007/s10295-015-1608-7 2015 Biotransformation, Calcium/*metabolism/pharmacology, Enzyme Activation, Enzyme Stability/drug effects, Escherichia coli/genetics, Ginsenosides/*metabolism, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/enzymology/genetics, Hydrogen-Ion Concentration, Molecular Weight, Temperature, beta-Glucosidase/chemistry/*genetics/isolation & purification/*metabolism Metabolism Enzymology *
    Thermodynamic and saccharification analysis of cloned GH12 endo-1,4-beta-glucanase from Thermotoga petrophila in a mesophilic host. Ul Haq I, Muneer B, Hussain Z, Khan MA, Afzal S, Majeed S, Akram F, Akmal S Protein Pept Lett 10.2174/0929866522666150630105035 2015 Amino Acid Sequence, Bacteria/enzymology/genetics, Bacterial Proteins/*chemistry/genetics/metabolism, Cellulase/*chemistry/genetics/metabolism, Enzyme Stability, Escherichia coli, Hydrogen-Ion Concentration, Molecular Sequence Data, Recombinant Proteins/*chemistry/genetics/metabolism, Sequence Alignment, Temperature, Thermodynamics Enzymology Metabolism *
    [Construction and characterization of a recombinant mutant homolog of the CheW protein from Thermotoga petrophila RKU-1]. Grishin DV, Zhdanov DD, Gladilina JA, Pokrovsky VS, Podobed OV, Pokrovskaya MV, Aleksandrova SS, Milyushkina AL, Vigovskiy MA, Sokolov NN Biomed Khim 10.18097/PBMC20186401053 2018 Bacterial Proteins, Escherichia coli, Escherichia coli Proteins, *Gram-Negative Anaerobic Straight, Curved, and Helical Rods, Recombinant Proteins *
    [Comparison of three different thermophilic beta-glucosidases for baicalin transformation]. Wu T, Zhang SS, Pei JJ, Xiao W, Wang ZZ, Zhao LG Zhongguo Zhong Yao Za Zhi 10.19540/j.cnki.cjcmm.20180201.002 2018 Flavonoids, Hydrogen-Ion Concentration, beta-Glucosidase/*metabolism Metabolism *

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