Name: Fervidobacterium pennivorans Ven5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17035

Type strain:

Species: Fervidobacterium pennivorans

Strain Designation: Ven5

Culture col. no.: DSM 9078

Strain history: <- R. Koch; Ven5 (Fervidobacterium pennavorans)

NCBI tax ID(s): 771875 (strain), 93466 (species)

SI-ID 48578

DSM 9078

Section

Fervidobacterium pennivorans Ven5 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from hot mud of spa.

Gram-negative
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Thermotogales*
	Family	*Fervidobacteriaceae*
	Genus	*Fervidobacterium*
	Species	**Fervidobacterium pennivorans**
	Full Scientific Name (LPSN)	Fervidobacterium pennivorans corrig. Friedrich and Antranikian 1999

Synonym

Fervidobacterium pennavorans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.806

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3462]

Culture medium

FERVIDOBACTERIUM TF(A) MEDIUM (DSMZ Medium 740)

[Ref.: #3462]

Culture medium growth

[Ref.: #3462]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3462]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3462]			growth	65 °C

[Ref.: #3462]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3462]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.21

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3462]	Sample type/isolated from	hot mud of spa
[Ref.: #3462]	Geographic location (country and/or sea, region)	Abano Terme
[Ref.: #3462]	Country	Italy
[Ref.: #3462]	Country ISO 3 Code	ITA
[Ref.: #3462]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE582750 (>99% sequence identity) for Fervidobacterium from Microbeatlas

Aquatic Samples	320
Soil Samples	19
Animal Samples	62
Plant Samples	9
Total Samples	410

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3462]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Fervidobacterium pennivorans partial 16S rRNA gene, type strain DSM 9078T, clone 1	HE582748	1495	ENA	93466 tax ID	*
[Ref.: #20218]	Fervidobacterium pennivorans partial 16S rRNA gene, type strain DSM 9078T, clone 2	HE582749	1495	ENA	93466 tax ID	*
[Ref.: #20218]	Fervidobacterium pennivorans partial 16S rRNA gene, type strain DSM 9078T, clone 3	HE582750	1495	ENA	93466 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fervidobacterium pennivorans DSM 9078	GCA_000235405	complete	GenBank	771875 tax ID	*
[Ref.: #66792]	Fervidobacterium pennivorans DSM 9078	771875.3	complete	PATRIC	771875 tax ID	*
[Ref.: #66792]	Fervidobacterium pennivorans Ven 5, DSM 9078	2507149014	complete	JGI IMG/M	771875 tax ID	*

[Ref.: #3462]

GC-content

40.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fervidobacterium pennivorans DSM 9078 DSM 9078 NCBI: GCA_000235405.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fervidobacterium pennivorans DSM 9078 DSM 9078 NCBI: GCA_000235405.3
[Ref.: #69480]	motile	yes	86.286	no
[Ref.: #69480]	flagellated	no	92.451	no
[Ref.: #69480]	gram-positive	no	93.828	no
[Ref.: #69480]	anaerobic	yes	99.449	yes
[Ref.: #69480]	aerobic	no	98.473	yes
[Ref.: #69480]	halophile	no	90.458	no
[Ref.: #69480]	spore-forming	no	89.887	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	92.911	no
[Ref.: #69480]	glucose-ferment	yes	60.219	no

Availability in culture collections External links

[Ref.: #3462]

Culture collection no.

DSM 9078

[Ref.: #86035]

SI-ID 48578

References

#3462

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9078

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86035

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48578.1 )

* These data were automatically processed and therefore are not curated

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Fervidobacterium pennivorans DSM 9078 DSM 9078

Fervidobacterium pennivorans DSM 9078 DSM 9078

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