Name: Fervidobacterium gondwanense AB39
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17036

Type strain:

Species: Fervidobacterium gondwanense

Strain Designation: AB39

Culture col. no.: DSM 13020, ACM 5017

Strain history: <- ACM <- K. T. Andrews and B. K. C. Patel, Griffith Univ., Brisbane, Australia; AB39

NCBI tax ID(s): 1121883 (strain), 44754 (species)

SI-ID 49387

DSM 13020, ACM 5017

Section

Fervidobacterium gondwanense AB39 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from geothermal water.

Gram-negative
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Thermotogales*
	Family	*Fervidobacteriaceae*
	Genus	*Fervidobacterium*
	Species	**Fervidobacterium gondwanense**
	Full Scientific Name (LPSN)	Fervidobacterium gondwanense Andrews and Patel 1996

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.739

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4873]

Culture medium

FERVIDOBACTERIUM TF(A) MEDIUM (DSMZ Medium 740)

[Ref.: #4873]

Culture medium growth

[Ref.: #4873]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4873]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4873]			growth	65 °C

[Ref.: #4873]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4873]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	no Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.72

[Ref.: #4873]

Name of produced compound

restriction endonuclease FgoI

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4873]	Sample type/isolated from	geothermal water
[Ref.: #4873]	Geographic location (country and/or sea, region)	Great Artesian Basin
[Ref.: #4873]	Country	Australia
[Ref.: #4873]	Country ISO 3 Code	AUS
[Ref.: #4873]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z49117 (>99% sequence identity) for Fervidobacterium gondwanense from Microbeatlas

Aquatic Samples	54
Soil Samples	2
Animal Samples	1
Plant Samples	11
Total Samples	68

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4873]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4873]	F.gondwanalandicum gene for 16S ribosomal RNA	Z49117	1478	ENA	44754 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fervidobacterium gondwanense DSM 13020	GCA_900143265	scaffold	GenBank	1121883 tax ID	*
[Ref.: #66792]	Fervidobacterium gondwanense DSM 13020	1121883.3	wgs	PATRIC	1121883 tax ID	*
[Ref.: #66792]	Fervidobacterium gondwanense DSM 13020	2582580731	draft	JGI IMG/M	1121883 tax ID	*

[Ref.: #4873]

GC-content

35 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fervidobacterium gondwanense DSM 13020 DSM 13020 NCBI: GCA_900143265.1
[Ref.: #69481]	spore-forming	no	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fervidobacterium gondwanense DSM 13020 DSM 13020 NCBI: GCA_900143265.1
[Ref.: #69480]	motile	yes	87.377	no
[Ref.: #69480]	flagellated	no	90.62	no
[Ref.: #69480]	gram-positive	no	93.414	no
[Ref.: #69480]	anaerobic	yes	99.616	yes
[Ref.: #69480]	aerobic	no	98.479	yes
[Ref.: #69480]	halophile	no	91.666	no
[Ref.: #69480]	spore-forming	no	89.339	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	91.473	no
[Ref.: #69480]	glucose-ferment	yes	64.214	no

Availability in culture collections External links

[Ref.: #4873]

Culture collection no.

DSM 13020, ACM 5017

[Ref.: #86036]

SI-ID 49387

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Development of fluorescent adjacent hybridization probes and their application in real-time PCR for the simultaneous detection and identification of Fervidobacterium and Caloramator.	Connolly GR, Patel BKC	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1837	2002	*
Phylogeny	Fervidobacterium gondwanense sp. nov., a new thermophilic anaerobic bacterium isolated from nonvolcanically heated geothermal waters of the Great Artesian Basin of Australia.	Andrews KT, Patel BK	Int J Syst Bacteriol	10.1099/00207713-46-1-265	1996	*

References

#4873

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13020

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86036

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49387.1 )

* These data were automatically processed and therefore are not curated

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Fervidobacterium gondwanense DSM 13020 DSM 13020

Fervidobacterium gondwanense DSM 13020 DSM 13020

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