Name: Sideroxyarcus emersonii MIZ01
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 169771

Type strain:

Species: Sideroxyarcus emersonii

Strain Designation: MIZ01

Culture col. no.: DSM 111897, JCM 111897

Strain history: <- S. Kato, RIKEN BRC-JCM, Japan; MIZ01

NCBI tax ID(s): 2764705 (species)

SI-ID 407082

DSM 111897

Special Collections

JCM
DSMZ

Section

Sideroxyarcus emersonii MIZ01 is a motile bacterium that was isolated from wetland soil.

motile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Nitrosomonadales*
	Family	*Gallionellaceae*
	Genus	*Sideroxyarcus*
	Species	**Sideroxyarcus emersonii**
	Full Scientific Name (LPSN)	Sideroxyarcus emersonii Kato et al. 2022

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.494

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69196]

Culture medium

FERRIPHASELUS (ES) MEDIUM (DSMZ Medium 1267)

[Ref.: #69196]

Culture medium growth

[Ref.: #69196]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69196]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.816

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69196]	Sample type/isolated from	wetland soil
[Ref.: #69196]	Geographic location (country and/or sea, region)	Tsukuba, Ibaraki
[Ref.: #69196]	Country	Japan
[Ref.: #69196]	Country ISO 3 Code	JPN
[Ref.: #69196]	Continent	Asia
[Ref.: #69196]	Geographic location	36.0780°/140.0900°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #69196]	Sideroxyarcus emersonii MIZ01 gene for 16S ribosomal RNA	LC656623	1536	GenBank ENA	2764705 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sideroxyarcus emersonii MIZ01	GCA_021654335	complete	GenBank ENA	2764705 tax ID	*

[Ref.: #69196]

GC-content

60 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sideroxyarcus emersonii MIZ01 NCBI: GCA_021654335.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.494	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	74.959	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	57.251	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.816	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.068	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.302	no

Availability in culture collections External links

[Ref.: #69196]

Culture collection no.

DSM 111897, JCM 111897

[Ref.: #115912]

SI-ID 407082

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sideroxyarcus emersonii gen. nov. sp. nov., a neutrophilic, microaerobic iron- and thiosulfate-oxidizing bacterium isolated from iron-rich wetland sediment.	Kato S, Itoh T, Iino T, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.005347	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69196

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111897

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115912

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407082.1 )

* These data were automatically processed and therefore are not curated

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