Name: Vermiculatibacterium agrestimuris CLA-AA-M16
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 169767

Type strain:

Species: Vermiculatibacterium agrestimuris

Strain Designation: CLA-AA-M16

Culture col. no.: DSM 112226

Strain history: <- T. Clavel, RWTH Aachen; CLA-AA-M16

NCBI tax ID(s): 2941519 (species)

Special Collections

Section

Vermiculatibacterium agrestimuris CLA-AA-M16 is an anaerobe bacterium that was isolated from caecal content; female, wild mouse.

anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	"Vermiculatibacterium"
	Species	"Vermiculatibacterium agrestimuris"
	Full Scientific Name (LPSN)	Vermiculatibacterium agrestimuris Afrizal et al. 2022

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %94.054

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69186]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #69186]

Culture medium growth

[Ref.: #69186]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69186]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69186]	Sample type/isolated from	caecal content; female, wild mouse
[Ref.: #69186]	Geographic location (country and/or sea, region)	Aachen
[Ref.: #69186]	Country	Germany
[Ref.: #69186]	Country ISO 3 Code	DEU
[Ref.: #69186]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vermiculatibacterium agrestimuris DSM 112226	GCA_943193085	contig	GenBank ENA	2941519 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vermiculatibacterium sp. DSM 112226 Oscillospiraceae_gen_nov_DSM112226 NCBI: GCA_943193085.1
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.036	no
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	67.289	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	81.071	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	69.317	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.34	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94.054	no

Availability in culture collections External links

[Ref.: #69186]

Culture collection no.

DSM 112226

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69186

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112226

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Vermiculatibacterium sp. DSM 112226 Oscillospiraceae_gen_nov_DSM112226

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