Strain identifier
BacDive ID: 169767
Type strain: 
Species: Vermiculatibacterium agrestimuris
Strain Designation: CLA-AA-M16
Strain history: <- T. Clavel, RWTH Aachen; CLA-AA-M16
NCBI tax ID(s): 2941519 (species)
General
@ref: 69186
BacDive-ID: 169767
DSM-Number: 112226
keywords: genome sequence, Bacteria, anaerobe
description: Vermiculatibacterium agrestimuris CLA-AA-M16 is an anaerobe bacterium that was isolated from caecal content; female, wild mouse.
NCBI tax id
- NCBI tax id: 2941519
- Matching level: species
strain history
- @ref: 69186
- history: <- T. Clavel, RWTH Aachen; CLA-AA-M16
doi: 10.13145/bacdive169767.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Vermiculatibacterium
- species: Vermiculatibacterium agrestimuris
- full scientific name: Vermiculatibacterium agrestimuris Afrizal et al. 2022
@ref: 69186
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Oscillospiraceae
genus: Vermiculatibacterium
species: Vermiculatibacterium agrestimuris
full scientific name: Vermiculatibacterium agrestimuris
strain designation: CLA-AA-M16
type strain: no
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 94.054
Culture and growth conditions
culture medium
- @ref: 69186
- name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1203a.pdf
culture temp
- @ref: 69186
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 69186
- sample type: caecal content; female, wild mouse
- geographic location: Aachen
- country: Germany
- origin.country: DEU
- continent: Europe
Sequence information
Genome sequences
- @ref: 66792
- description: Vermiculatibacterium agrestimuris DSM 112226
- accession: GCA_943193085
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2941519
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 92.036 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 67.289 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 81.071 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 69.317 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.34 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94.054 | no |
External links
@ref: 69186
culture collection no.: DSM 112226
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69186 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-112226 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112226) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |