Cite this strain

"Hominisplanchenecus murintestinalis" (DSM 110165, NM72_1-8, NM72)

BacDive ID 169766

Type strain

Strain Designation NM72_1-8, NM72, 1-8

Culture col. no. DSM 110165 NM72_1-8 NM72 1-8

NCBI tax ID(s) 2941517

Special Collections Mouse-Microbiome 2 DSMZ DZIF

Links

"Hominisplanchenecus murintestinalis" NM72_1-8 is a mesophilic prokaryote that was isolated from caecal/colon content; C57BL/6, APCmin/+ Msh2+/-, 9-week-old mouse.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 396832

DSM 110165

@ref 20215

Last LPSN update 2025-12-16 10:10:39

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Hominisplanchenecus

Species "Hominisplanchenecus murintestinalis"

Full scientific name Hominisplanchenecus murintestinalis Afrizal et al. 2022

BacDive ID	Other strains from "Hominisplanchenecus murintestinalis" (1)	Type strain
175417	". murintestinalis" CLA-AA-M05, SCD1301-BHI6-F6, DSM 111139

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
69185	GAM Broth, modified (Gifu Anaerobic Medium Broth, modified) (DSMZ Medium 1715)		Medium recipe at MediaDive	Name: GAM Broth, modified (Gifu Anaerobic Medium Broth, modified) (DSMZ Medium 1715) Composition: GAM Broth mod. powder 41.7 g/l Deionized water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
69185	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	93.393
125439	anaerobe	100

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
69185	caecal/colon content; C57BL/6, APCmin/+ Msh2+/-, 9-week-old mouse	Toronto	Canada	CAN	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM479358v1 assembly for Hominisplanchenecus murintestinalis NM72_1-8	contig	GCA_004793585	1898203.1729	2941517	43.92

Genome browser: GCA_004793585

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hominisplanchenecus murintestinalis NM72_1-8
NCBI: GCA_004793585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	59.50	no
125439	motility	BacteriaNetⓘ	yes	67.20	no
125439	gram_stain	BacteriaNetⓘ	positive	62.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	100.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hominisplanchenecus murintestinalis NM72_1-8
NCBI: GCA_004793585.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.34	no
125438	anaerobic	anaerobicⓘ	yes	93.39	no
125438	aerobic	aerobicⓘ	no	95.88	no
125438	spore-forming	spore-formingⓘ	yes	53.46	no
125438	thermophilic	thermophileⓘ	no	91.15	no
125438	flagellated	motile2+ⓘ	no	53.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69185	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110165
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us