Strain identifier
BacDive ID: 169766
Type strain: 
Species: Hominisplanchenecus murintestinalis
Strain Designation: NM72_1-8, NM72, 1-8
Strain history: <- W. Navarre, Toronto; NM72_1-8
General
@ref: 69185
BacDive-ID: 169766
DSM-Number: 110165
keywords: genome sequence, Bacteria, mesophilic
description: Hominisplanchenecus murintestinalis NM72_1-8 is a mesophilic bacterium that was isolated from caecal/colon content; C57BL/6, APCmin/+ Msh2+/-, 9-week-old mouse.
strain history
- @ref: 69185
- history: <- W. Navarre, Toronto; NM72_1-8
doi: 10.13145/bacdive169766.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Hominisplanchenecus
- species: Hominisplanchenecus murintestinalis
- full scientific name: Hominisplanchenecus murintestinalis Afrizal et al. 2022
@ref: 69185
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Hominisplanchenecus
species: Hominisplanchenecus murintestinalis
full scientific name: Hominisplanchenecus murintestinalis
strain designation: NM72_1-8, NM72, 1-8
type strain: no
Culture and growth conditions
culture medium
- @ref: 69185
- name: GAM Broth, modified (Gifu Anaerobic Medium Broth, modified) (DSMZ Medium 1715)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1715.pdf
culture temp
- @ref: 69185
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 69185
- sample type: caecal/colon content; C57BL/6, APCmin/+ Msh2+/-, 9-week-old mouse
- geographic location: Toronto
- country: Canada
- origin.country: CAN
- continent: North America
Sequence information
Genome sequences
- @ref: 66792
- description: Hominisplanchenecus murintestinalis NM72_1-8
- accession: GCA_004793585
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2941517
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 50 | no |
| flagellated | no | 71.686 | no |
| gram-positive | yes | 93.852 | no |
| anaerobic | yes | 99.662 | no |
| aerobic | no | 98.163 | no |
| halophile | no | 92.97 | no |
| spore-forming | yes | 68.875 | no |
| glucose-util | yes | 84.141 | no |
| thermophile | no | 96.048 | yes |
| glucose-ferment | yes | 64.689 | no |
External links
@ref: 69185
culture collection no.: DSM 110165
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69185 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110165 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110165) |