Strain identifier
BacDive ID: 169766
Type strain: 
Species: Hominisplanchenecus murintestinalis
Strain Designation: NM72_1-8, NM72, 1-8
Strain history: <- W. Navarre, Toronto; NM72_1-8
NCBI tax ID(s): 2941517 (species)
General
@ref: 69185
BacDive-ID: 169766
DSM-Number: 110165
keywords: genome sequence, Bacteria, anaerobe, Gram-positive
description: Hominisplanchenecus murintestinalis NM72_1-8 is an anaerobe, Gram-positive bacterium that was isolated from caecal/colon content; C57BL/6, APCmin/+ Msh2+/-, 9-week-old mouse.
NCBI tax id
- NCBI tax id: 2941517
- Matching level: species
strain history
- @ref: 69185
- history: <- W. Navarre, Toronto; NM72_1-8
doi: 10.13145/bacdive169766.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Hominisplanchenecus
- species: Hominisplanchenecus murintestinalis
- full scientific name: Hominisplanchenecus murintestinalis Afrizal et al. 2022
@ref: 69185
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Hominisplanchenecus
species: Hominisplanchenecus murintestinalis
full scientific name: Hominisplanchenecus murintestinalis
strain designation: NM72_1-8, NM72, 1-8
type strain: no
Culture and growth conditions
culture medium
- @ref: 69185
- name: GAM Broth, modified (Gifu Anaerobic Medium Broth, modified) (DSMZ Medium 1715)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1715.pdf
culture temp
- @ref: 69185
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 93.393
Isolation, sampling and environmental information
isolation
- @ref: 69185
- sample type: caecal/colon content; C57BL/6, APCmin/+ Msh2+/-, 9-week-old mouse
- geographic location: Toronto
- country: Canada
- origin.country: CAN
- continent: North America
Sequence information
Genome sequences
- @ref: 66792
- description: Hominisplanchenecus murintestinalis NM72_1-8
- accession: GCA_004793585
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2941517
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 74.336 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 93.393 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.877 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 53.456 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 91.151 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 53.5 | no |
External links
@ref: 69185
culture collection no.: DSM 110165
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69185 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-110165 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110165) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |