Name: Dokdonia sp. Hel_I_53
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 169731

Type strain:

Species: Dokdonia sp.

Strain Designation: Hel_I_53, Hel1_53

Culture col. no.: DSM 29410

Strain history: <- J. Harder, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; Hel1_53 <- R. Hahnke

NCBI tax ID(s): 2024995 (species)

SI-ID 400489

DSM 29410

Special Collections

DSMZ

Other strains from Dokdonia sp.

Section

Dokdonia sp. Hel_I_53 is a Gram-negative bacterium that was isolated from seawater sample.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Dokdonia*
	Full Scientific Name (LPSN)	Dokdonia Yoon et al. 2005

Synonym

Krokinobacter

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.7

[Ref.: #69480]	Motility	no Confidence in %93.1

Multimedia content

[Ref.: #69150]

Caption:

DSM 29410

[Ref.: #69150]

Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69150]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #69150]

Culture medium growth

[Ref.: #69150]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69150]			growth	15 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.833

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69150]	Sample type/isolated from	seawater sample
[Ref.: #69150]	Geographic location (country and/or sea, region)	Helgoland
[Ref.: #69150]	Country	Germany
[Ref.: #69150]	Country ISO 3 Code	DEU
[Ref.: #69150]	Continent	Europe
[Ref.: #69150]	Geographic location	54.1842°/7.9000°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dokdonia sp. Hel1_53	GCA_007827465	contig	GenBank ENA	1566287 tax ID	*
[Ref.: #66792]	Dokdonia sp. Hel1_53	1566287.3	wgs	PATRIC	1566287 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dokdonia sp. Hel1_53 PATRIC: 1566287.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.7	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.167	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.833	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.668	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.813	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.1	no

Availability in culture collections External links

[Ref.: #69150]

Culture collection no.

DSM 29410

[Ref.: #115899]

SI-ID 400489

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69150

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29410

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115899

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400489.1 )

* These data were automatically processed and therefore are not curated

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Dokdonia sp. Hel1_53

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