Strain identifier
BacDive ID: 169731
Type strain: 
Species: Dokdonia sp.
Strain Designation: Hel_I_53, Hel1_53
Strain history: <- J. Harder, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; Hel1_53 <- R. Hahnke
NCBI tax ID(s): 2024995 (species)
version 9.1 (current version)
General
@ref: 69150
BacDive-ID: 169731
DSM-Number: 29410
keywords: genome sequence, Bacteria, Gram-negative
description: Dokdonia sp. Hel_I_53 is a Gram-negative bacterium that was isolated from seawater sample.
NCBI tax id
- NCBI tax id: 2024995
- Matching level: species
strain history
- @ref: 69150
- history: <- J. Harder, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; Hel1_53 <- R. Hahnke
doi: 10.13145/bacdive169731.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Dokdonia
- species: Dokdonia sp.
- full scientific name: Dokdonia Yoon et al. 2005
synonyms
- @ref: 20215
- synonym: Krokinobacter
@ref: 69150
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Krokinobacter
species: Krokinobacter sp.
full scientific name: Krokinobacter sp.
strain designation: Hel_I_53, Hel1_53
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.1 | |
| 69480 | 97.7 | negative |
multimedia
- @ref: 69150
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29410.jpg
- caption: DSM 29410
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
- @ref: 69150
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
culture temp
- @ref: 69150
- growth: positive
- type: growth
- temperature: 15
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.833
Isolation, sampling and environmental information
isolation
- @ref: 69150
- sample type: seawater sample
- geographic location: Helgoland
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 54.1842
- longitude: 7.9
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Dokdonia sp. Hel1_53 | GCA_007827465 | contig | ncbi | 1566287 |
| 66792 | Dokdonia sp. Hel1_53 | 1566287.3 | wgs | patric | 1566287 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.7 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.167 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.833 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 86.668 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.813 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93.1 | no |
External links
@ref: 69150
culture collection no.: DSM 29410
straininfo link
- @ref: 115899
- straininfo: 400489
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69150 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29410 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29410) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 115899 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400489.1 |