Name: Dokdonia sp. PR095
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24015

Type strain:

Species: Dokdonia sp.

Strain Designation: PR095

Culture col. no.: DSM 26625

Strain history: <- T. Riedel, HZI, Braunschweig, Germany; PR095 <- T. Riedel and I. Wagner-Döbler

NCBI tax ID(s): 2024995 (species)

SI-ID 402400

DSM 26625

Special Collections

DSMZ

Other strains from Dokdonia sp.

Section

Dokdonia sp. PR095 is a Gram-negative bacterium that was isolated from surface water of North Sea.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Dokdonia*
	Full Scientific Name (LPSN)	Dokdonia Yoon et al. 2005

Synonym

Krokinobacter

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.481

[Ref.: #69480]	Motility	no Confidence in %93.75

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20530]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20530]

Culture medium growth

[Ref.: #20530]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20530]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20530]			growth	10-30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.327
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20530]	Sample type/isolated from	surface water of North Sea
[Ref.: #20530]	Country	Germany
[Ref.: #20530]	Country ISO 3 Code	DEU
[Ref.: #20530]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ627052 (>99% sequence identity) for Dokdonia from Microbeatlas

Aquatic Samples	10205
Soil Samples	263
Animal Samples	829
Plant Samples	97
Total Samples	11394

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20530]	Dokdonia sp. PRO95 16S ribosomal RNA gene, partial sequence	FJ627052	1432	GenBank ENA	1239415 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dokdonia sp. PRO95	1239415.5	complete	PATRIC	1239415 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dokdonia sp. PRO95 PATRIC: 1239415.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dokdonia sp. PRO95 PATRIC: 1239415.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.481	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	99.319	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.327	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.414	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.222	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93.75	no

Availability in culture collections External links

[Ref.: #20530]

Culture collection no.

DSM 26625

[Ref.: #87989]

SI-ID 402400

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20530

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26625

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87989

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402400.1 )

* These data were automatically processed and therefore are not curated

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Dokdonia sp. PRO95

Dokdonia sp. PRO95

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