Name: Microbacterium paraoxydans DH1b
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 169475

Type strain:

Species: Microbacterium paraoxydans

Strain Designation: DH1b

Culture col. no.: DSM 103224

Strain history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; DH1b

SI-ID 407181

DSM 103224

Other strains from Microbacterium paraoxydans

M. paraoxydans CF36, DSM 15019, CCUG 46601, CIP ... (type strain)
M. paraoxydans CF7, DSM 15020, CCUG 46602
M. paraoxydans CF40, DSM 15021, CCUG 46603
M. paraoxydans C57-33, DSM 15461
M. paraoxydans KO_PS37, DSM 30839
M. paraoxydans CCUG 60603 A
M. paraoxydans T_C3, DSM 110318

Section

Microbacterium paraoxydans DH1b is a mesophilic bacterium that was isolated from Nepenthes digestive fluid.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium paraoxydans**
	Full Scientific Name (LPSN)	Microbacterium paraoxydans Laffineur et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68761]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #68761]

Culture medium growth

[Ref.: #68761]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #68761]			growth	28 °C

[Ref.: #68761]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68761]	Sample type/isolated from	Nepenthes digestive fluid
[Ref.: #68761]	Geographic location (country and/or sea, region)	Pahang, Mossy Forest
[Ref.: #68761]	Country	Malaysia
[Ref.: #68761]	Country ISO 3 Code	MYS
[Ref.: #68761]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #68761]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68761]	Microbacterium paraoxydans strain DH1b 16S ribosomal RNA gene, partial sequence	KF557585	1475	ENA	199592 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium paraoxydans DH1b	GCA_000633215	contig	GenBank	1416752 tax ID	*
[Ref.: #66792]	Microbacterium paraoxydans DH1b	1416752.5	wgs	PATRIC	1416752 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium paraoxydans DH1b PATRIC: 1416752.5
[Ref.: #69480]	motile	yes	61.957	no
[Ref.: #69480]	gram-positive	yes	90.69	no
[Ref.: #69480]	anaerobic	no	99.014	no
[Ref.: #69480]	halophile	no	87.226	no
[Ref.: #69480]	spore-forming	no	86.713	no
[Ref.: #69480]	thermophile	no	99.533	no
[Ref.: #69480]	glucose-util	yes	83.041	no
[Ref.: #69480]	aerobic	yes	92.765	no
[Ref.: #69480]	flagellated	no	92.59	no
[Ref.: #69480]	glucose-ferment	no	89.26	no

Availability in culture collections External links

[Ref.: #68761]

Culture collection no.

DSM 103224

[Ref.: #115687]

SI-ID 407181

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68761

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103224

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115687

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407181.1 )

* These data were automatically processed and therefore are not curated

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