Name: Thermodesulfobacterium hveragerdense JSP
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16893

Type strain:

Species: Thermodesulfobacterium hveragerdense

Strain Designation: JSP

Culture col. no.: DSM 12571

Strain history: <- J. Sonne-Hansen, Tech. Univ. of Denmark DTU, Lyngby; JSP <- J. Sonne-Hansen and B. K. Ahring {1992}

NCBI tax ID(s): 1123372 (strain), 53424 (species)

SI-ID 49320

DSM 12571

Section

Thermodesulfobacterium hveragerdense JSP is an anaerobe, spore-forming, thermophilic bacterium that was isolated from microbial mat from hot spring.

Gram-negative
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermodesulfobacteriota*
	Class	*Thermodesulfobacteria*
	Order	*Thermodesulfobacteriales*
	Family	*Thermodesulfobacteriaceae*
	Genus	*Thermodesulfobacterium*
	Species	**Thermodesulfobacterium hveragerdense**
	Full Scientific Name (LPSN)	Thermodesulfobacterium hveragerdense Sonne-Hansen and Ahring 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.979

Multimedia content

[Ref.: #4677]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4677]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #4677]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4677]			growth	65 °C

[Ref.: #4677]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4677]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	yes Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.929

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4677]	Sample type/isolated from	microbial mat from hot spring
[Ref.: #4677]	Country	Iceland
[Ref.: #4677]	Country ISO 3 Code	ISL
[Ref.: #4677]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Microbial community	#Microbial mat
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_029311 (>99% sequence identity) for Thermodesulfobacterium from Microbeatlas

Aquatic Samples	88
Soil Samples	2
Animal Samples	31
Plant Samples	1
Total Samples	122

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4677]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4677]	Thermodesulfobacterium hveragerdense strain JSP 16S ribosomal RNA, partial sequence	NR_029311	1454	GenBank	53424 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermodesulfobacterium hveragerdense DSM 12571	GCA_000423845	scaffold	GenBank	1123372 tax ID	*
[Ref.: #66792]	Thermodesulfobacterium hveragerdense DSM 12571	1123372.3	wgs	PATRIC	1123372 tax ID	*
[Ref.: #66792]	Thermodesulfobacterium hveragerdense DSM 12571	2524023142	draft	JGI IMG/M	1123372 tax ID	*

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GC-content

40 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermodesulfobacterium hveragerdense DSM 12571 DSM 12571 NCBI: GCA_000423845.1
[Ref.: #69481]	spore-forming	yes	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermodesulfobacterium hveragerdense DSM 12571 DSM 12571 NCBI: GCA_000423845.1
[Ref.: #69480]	motile	yes	90.205	no
[Ref.: #69480]	flagellated	no	90.627	no
[Ref.: #69480]	gram-positive	no	99.505	no
[Ref.: #69480]	anaerobic	yes	99.998	yes
[Ref.: #69480]	aerobic	no	99.533	yes
[Ref.: #69480]	halophile	no	86.572	no
[Ref.: #69480]	spore-forming	no	97.079	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	no	63.462	no
[Ref.: #69480]	glucose-ferment	no	86.714	no

Availability in culture collections External links

[Ref.: #4677]

Culture collection no.

DSM 12571

[Ref.: #85899]

SI-ID 49320

References

#4677

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12571

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85899

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49320.1 )

* These data were automatically processed and therefore are not curated

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Thermodesulfobacterium hveragerdense DSM 12571 DSM 12571

Thermodesulfobacterium hveragerdense DSM 12571 DSM 12571

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