Name: Thermodesulfobacterium hydrogeniphilum SL6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16894

Type strain:

Species: Thermodesulfobacterium hydrogeniphilum

Strain Designation: SL6

Culture col. no.: DSM 14290, JCM 11239

Strain history: <- C. Jeanthon, Centre National de la Recherche Scientifique, and Université de Bretagne Occidentale, Institut Universitaire Européen de la Mer, Plouzané, France; SL6 <- S. L'Haridon {1998}

NCBI tax ID(s): 161156 (species)

SI-ID 101010

DSM 14290, JCM 11239

Section

Thermodesulfobacterium hydrogeniphilum SL6 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from deep-sea hydrothermal vent sulfides, 2000 m depth.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermodesulfobacteriota*
	Class	*Thermodesulfobacteria*
	Order	*Thermodesulfobacteriales*
	Family	*Thermodesulfobacteriaceae*
	Genus	*Thermodesulfobacterium*
	Species	**Thermodesulfobacterium hydrogeniphilum**
	Full Scientific Name (LPSN)	Thermodesulfobacterium hydrogeniphilum Jeanthon et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.979

[Ref.: #69480]	Motility	yes Confidence in %92.641

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5301]

Culture medium

THERMODESULFOBACTERIUM HYDROGENIPHILUM MEDIUM (DSMZ Medium 829b)

[Ref.: #5301]

Culture medium growth

[Ref.: #5301]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5301]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5301]			growth	70 °C

[Ref.: #5301]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5301]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.922

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5301]	Sample type/isolated from	deep-sea hydrothermal vent sulfides, 2000 m depth
[Ref.: #5301]	Geographic location (country and/or sea, region)	Guaymas Basin hydrothermal vent field
[Ref.: #5301]	Country	Mexico
[Ref.: #5301]	Country ISO 3 Code	MEX
[Ref.: #5301]	Continent	North America
[Ref.: #5301]	Geographic location	27.0167°/-111.4000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Sulfuric	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF332514 (>99% sequence identity) for Thermodesulfobacterium hydrogeniphilum subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	1
Animal Samples	1
Plant Samples
Total Samples	60

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5301]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5301]	Thermodesulfobacterium hydrogeniphilum 16S ribosomal RNA gene, partial sequence	AF332514	1497	ENA	161156 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermodesulfobacterium hydrogeniphilum DSM 14290	GCA_000746255	scaffold	GenBank	161156 tax ID	*
[Ref.: #66792]	Thermodesulfobacterium hydrogeniphilum strain DSM 14290	161156.3	wgs	PATRIC	161156 tax ID	*
[Ref.: #66792]	Thermodesulfobacterium hydrogeniphilum DSM 14290	2579779159	draft	JGI IMG/M	161156 tax ID	*

[Ref.: #5301]

GC-content

28 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermodesulfobacterium hydrogeniphilum DSM 14290 NCBI: GCA_000746255.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermodesulfobacterium hydrogeniphilum DSM 14290 NCBI: GCA_000746255.1
[Ref.: #69480]	motile	yes	87.095	no
[Ref.: #69480]	flagellated	no	93.922	no
[Ref.: #69480]	gram-positive	no	99.585	no
[Ref.: #69480]	anaerobic	yes	99.999	yes
[Ref.: #69480]	aerobic	no	99.481	yes
[Ref.: #69480]	halophile	no	87.753	no
[Ref.: #69480]	spore-forming	no	96.111	no
[Ref.: #69480]	glucose-util	no	65.801	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-ferment	no	85.661	no

Availability in culture collections External links

[Ref.: #5301]

Culture collection no.

DSM 14290, JCM 11239

[Ref.: #85900]

SI-ID 101010

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermodesulfobacterium hydrogeniphilum sp. nov., a thermophilic, chemolithoautotrophic, sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent at Guaymas Basin, and emendation of the genus Thermodesulfobacterium.	Jeanthon C, L'Haridon S, Cueff V, Banta A, Reysenbach AL, Prieur D	Int J Syst Evol Microbiol	10.1099/00207713-52-3-765	2002	*

References

#5301

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14290

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85900

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID101010.1 )

* These data were automatically processed and therefore are not curated

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Thermodesulfobacterium hydrogeniphilum DSM 14290

Thermodesulfobacterium hydrogeniphilum DSM 14290

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