Name: Thermococcus alcaliphilus AEDII12
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16867

Type strain:

Species: Thermococcus alcaliphilus

Strain Designation: AEDII12

Culture col. no.: DSM 10322

Strain history: <- M. Keller and K. O. Stetter; AEDII12

NCBI tax ID(s): 139207 (species)

SI-ID 101005

DSM 10322

Special Collections

DSMZ

Section

Thermococcus alcaliphilus AEDII12 is an anaerobe, Gram-negative archaeon that was isolated from shallow marine hydrothermal system at Vulcano.

Gram-negative
anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Thermococcus*
	Species	**Thermococcus alcaliphilus**
	Full Scientific Name (LPSN)	Thermococcus alcaliphilus Keller et al. 1997

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3906]

Culture medium

MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)

[Ref.: #3906]

Culture medium growth

[Ref.: #3906]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3906]

Culture medium composition

expand / minimize

[Ref.: #3906]

Culture medium

ALKALIPHILIC THERMOCOCCUS MEDIUM (DSMZ Medium 926)

[Ref.: #3906]

Culture medium growth

[Ref.: #3906]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3906]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3906]			growth	85 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3906]

Oxygen tolerance

anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.377

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3906]	Sample type/isolated from	shallow marine hydrothermal system at Vulcano
[Ref.: #3906]	Country	Italy
[Ref.: #3906]	Country ISO 3 Code	ITA
[Ref.: #3906]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Volcanic
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3906]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thermococcus alcaliphilus gene for 16S rRNA, partial sequence, strain:DSM 10322	AB055121	1420	GenBank ENA	139207 tax ID	*
[Ref.: #20218]	Thermococcus alcaliphilus 16S rRNA gene, strain DSM 10322 Type	AJ291812	1306	GenBank ENA	139207 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermococcus alcaliphilus AEDII12	GCA_024054535	contig	GenBank ENA	139207 tax ID	*

[Ref.: #3906]

GC-content

42 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermococcus alcaliphilus AEDII12 NCBI: GCA_024054535.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	69.876	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	87.472	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	86.993	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.377	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	83.66	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	79.583	no

Availability in culture collections External links

[Ref.: #3906]

Culture collection no.

DSM 10322

[Ref.: #85875]

SI-ID 101005

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermococcus alcaliphilus sp. nov., a new hyperthermophilic archaeum growing on polysulfide at alkaline pH.	Keller M, Braun FJ, Dirmeier R, Hafenbradl D, Burggraf S, Rachel R, Stetter KO	Arch Microbiol		1995	*

References

#3906

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10322

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85875

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID101005.1 )

* These data were automatically processed and therefore are not curated

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