Name: Carboxydothermus hydrogenoformans Z-2901
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16806

Type strain:

Species: Carboxydothermus hydrogenoformans

Strain Designation: Z-2901

Culture col. no.: DSM 6008, ATCC BAA 161

Strain history: <- G. A. Zavarzin, Institute of Microbiology, Russ. Academy of Sciences, Moscow, Russia; Z-2901

NCBI tax ID(s): 129958 (species)

Section

Carboxydothermus hydrogenoformans Z-2901 is an anaerobe, thermophilic bacterium that was isolated from hot spring.

anaerobe
thermophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermoanaerobacterales*
	Family	*Thermoanaerobacteraceae*
	Genus	*Carboxydothermus*
	Species	**Carboxydothermus hydrogenoformans**
	Full Scientific Name (PNU)	Carboxydothermus hydrogenoformans Svetlichny et al. 1991

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2417]

Culture medium

CARBOXYDOTHERMUS MEDIUM (HETEROTROPH) (DSMZ Medium 508)

[Ref.: #2417]

Culture medium growth

[Ref.: #2417]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2417]

Culture medium composition

expand / minimize

[Ref.: #2417]

Culture medium

CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507)

[Ref.: #2417]

Culture medium growth

[Ref.: #2417]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2417]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2417]			growth	65 °C

[Ref.: #2417]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2417]

Oxygen tolerance

anaerobe

[Ref.: #2417]

Name of produced compound

H₂

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2417]	Sample type/isolated from	hot spring
[Ref.: #2417]	Geographic location (country and/or sea, region)	Kunashir Island, Kuril Islands
[Ref.: #2417]	Country	USSR
[Ref.: #2417]	Country ISO 3 Code	RUS
[Ref.: #2417]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2417]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Carboxydothermus hydrogenoformans Z-2901 Z-2901	GCA_000012865	complete	GenBank	246194 tax ID	*
[Ref.: #66792]	Carboxydothermus hydrogenoformans Z-2901	246194.6	complete	PATRIC	246194 tax ID	*
[Ref.: #66792]	Carboxydothermus hydrogenoformans Z-2901	637000060	complete	JGI IMG/M	246194 tax ID	*
[Ref.: #66792]	Candidatus Brocadia sp. AMX3	GCA_011526495	contig	PATRIC	2172549 tax ID	*

[Ref.: #2417]

GC-content

39.0 mol%

Availability in culture collections External links

[Ref.: #2417]

Culture collection no.

DSM 6008, ATCC BAA 161

[Ref.: #20218]

Associated Passport(s) in StrainInfo

159583, 159584

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Carbon monoxide conversion by thermophilic sulfate-reducing bacteria in pure culture and in co-culture with Carboxydothermus hydrogenoformans.	Parshina SN, Kijlstra S, Henstra AM, Sipma J, Plugge CM, Stams AJ	Appl Microbiol Biotechnol	10.1007/s00253-004-1878-x	2005	*
Genetics	Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.	Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Haft DH, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, Zhulin IB, Robb FT, Eisen JA	PLoS Genet	10.1371/journal.pgen.0010065	2005	*
Phylogeny	Reclassification of Thermoterrabacterium ferrireducens as Carboxydothermus ferrireducens comb. nov., and emended description of the genus Carboxydothermus.	Slobodkin AI, Sokolova TG, Lysenko AM, Wiegel J	Int J Syst Evol Microbiol	10.1099/ijs.0.64503-0	2006	*
Enzymology	Characterization of a thermostable methylaspartate ammonia lyase from Carboxydothermus hydrogenoformans.	Raj H, Puthan Veetil V, Szymanski W, Dekker FJ, Quax WJ, Feringa BL, Janssen DB, Poelarends GJ	Appl Microbiol Biotechnol	10.1007/s00253-011-3615-6	2011	*
	Elementary Flux Mode Analysis of Acetyl-CoA Pathway in Carboxydothermus hydrogenoformans Z-2901.	Chinnasamy Perumal R, Selvaraj A, Ramesh Kumar G	Adv Bioinformatics	10.1155/2014/928038	2014	*

References

#2417

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6008

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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