Name: Methyloferula stellata AR4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1676

Type strain:

Species: Methyloferula stellata

Strain Designation: AR4

Culture col. no.: DSM 22108, LMG 25277, VKM B-2543

Strain history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; AR4

NCBI tax ID(s): 876269 (strain), 876270 (species)

SI-ID 378352

DSM 22108, LMG 25277, VKM B-2543

Section

Methyloferula stellata AR4 is a psychrophilic bacterium that was isolated from acidic peat soil of an oligo-mesotrophic fen.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Beijerinckiaceae*
	Genus	*Methyloferula*
	Species	**Methyloferula stellata**
	Full Scientific Name (LPSN)	Methyloferula stellata Vorobev et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16139]

Culture medium

METHYLOFERULA STELLATA (DSMZ Medium 1322)

[Ref.: #16139]

Culture medium growth

[Ref.: #16139]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16139]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16139]			growth	23 °C

[Ref.: #16139]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16139]	Sample type/isolated from	acidic peat soil of an oligo-mesotrophic fen
[Ref.: #16139]	Geographic location (country and/or sea, region)	Archangelsk Region, Torfjanoye (65° 01' N 35° 44' E)
[Ref.: #16139]	Country	Russia
[Ref.: #16139]	Country ISO 3 Code	RUS
[Ref.: #16139]	Continent	Europe
[Ref.: #16139]	Geographic location	65.0167°/35.7333°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Environmental	#Terrestrial	#Soil
#Condition	#Acidic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR686343 (>99% sequence identity) for Methyloferula stellata subclade from Microbeatlas

Aquatic Samples	186
Soil Samples	326
Animal Samples	96
Plant Samples	60
Total Samples	668

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16139]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16139]	Methyloferula stellata AR4 partial 16S rRNA gene, type strain AR4	FR686343	1408	ENA	876269 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methyloferula stellata AR4	876269.3	wgs	PATRIC	876269 tax ID	*
[Ref.: #66792]	Methyloferula stellata AR4	2516653063	draft	JGI IMG/M	876269 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methyloferula stellata AR4 PATRIC: 876269.3
[Ref.: #69480]	motile	yes	78.724	no
[Ref.: #69480]	flagellated	no	74.541	no
[Ref.: #69480]	gram-positive	no	97.773	no
[Ref.: #69480]	anaerobic	no	93.458	no
[Ref.: #69480]	halophile	no	94.012	no
[Ref.: #69480]	spore-forming	no	93.824	no
[Ref.: #69480]	thermophile	no	97.736	no
[Ref.: #69480]	glucose-util	yes	76.452	no
[Ref.: #69480]	aerobic	yes	70.891	no
[Ref.: #69480]	glucose-ferment	no	93.462	no

Availability in culture collections External links

[Ref.: #16139]

Culture collection no.

DSM 22108, LMG 25277, VKM B-2543

[Ref.: #71323]

SI-ID 378352

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase.	Vorobev AV, Baani M, Doronina NV, Brady AL, Liesack W, Dunfield PF, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijs.0.028118-0	2010	*

References

#16139

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22108

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71323

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID378352.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Methyloferula stellata in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF