Name: Thermus composti K-39
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16733

Type strain:

Species: Thermus composti

Strain Designation: K-39

Culture col. no.: DSM 21686, JCM 19902, NCAIM B 02340

Strain history: DSM 21686 <-- B. Vajna K-39.

NCBI tax ID(s): 532059 (species)

SI-ID 403964

DSM 21686

Section

Thermus composti K-39 is an aerobe, thermophilic, Gram-negative bacterium that was isolated from oyster mushroom compost.

Gram-negative
rod-shaped
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus composti**
	Full Scientific Name (LPSN)	Thermus composti Vajna et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30212]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.739

[Ref.: #30212]	Cell length	5 µm

[Ref.: #30212]	Cell width	0.6 µm

[Ref.: #30212]	Cell shape	rod-shaped

[Ref.: #30212]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.47

[Ref.: #30212]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15886]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15886]

Culture medium growth

[Ref.: #15886]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15886]

Culture medium composition

expand / minimize

[Ref.: #15886]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #15886]

Culture medium growth

[Ref.: #15886]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15886]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15886]	growth	45 °C
[Ref.: #30212]	growth	40-80 °C
[Ref.: #30212]	optimum	67.5 °C
[Ref.: #67770]	growth	70 °C

[Ref.: #15886]	Temperature range	thermophilic
[Ref.: #30212]	Temperature range	hyperthermophilic
[Ref.: #30212]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

	pH	Kind of pH		pH
[Ref.: #30212]			optimum	7
[Ref.: #30212]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30212]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.845

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30212]		NaCl		growth	0.5-1.5	%

[Ref.: #67770]

Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30212]	acetate ChEBI	+	carbon source
[Ref.: #30212]	esculin ChEBI	+	hydrolysis
[Ref.: #30212]	fructose ChEBI	+	carbon source
[Ref.: #30212]	glucose ChEBI	+	carbon source
[Ref.: #30212]	maltose ChEBI	+	carbon source
[Ref.: #30212]	pyruvate ChEBI	+	carbon source
[Ref.: #30212]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30212]	catalase	+	1.11.1.6
[Ref.: #30212]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30212]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15886]	Sample type/isolated from	oyster mushroom compost
[Ref.: #15886]	Geographic location (country and/or sea, region)	Kecskemét
[Ref.: #15886]	Country	Hungary
[Ref.: #15886]	Country ISO 3 Code	HUN
[Ref.: #15886]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Thermophilic phase of the composting process for oyster mushroom substrate preparation
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Host	#Fungi	#Mushroom
#Host	#Invertebrates (Other)	#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU701067 (>99% sequence identity) for Thermus composti subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	25
Animal Samples	36
Plant Samples	2
Total Samples	104

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15886]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15886]	Thermus composti strain K-39 16S ribosomal RNA gene, partial sequence	EU701067	1445	ENA	532059 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermus composti JCM 19902	GCA_014647535	contig	GenBank	532059 tax ID	*
[Ref.: #66792]	Thermus composti strain JCM 19902	532059.3	wgs	PATRIC	532059 tax ID	*

[Ref.: #15886]	GC-content	71.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30212]	GC-content	71.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermus composti strain JCM 19902 PATRIC: 532059.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus composti strain JCM 19902 PATRIC: 532059.3
[Ref.: #69480]	gram-positive	no	95.009	yes
[Ref.: #69480]	anaerobic	no	94.992	yes
[Ref.: #69480]	halophile	no	90.219	yes
[Ref.: #69480]	spore-forming	no	91.891	no
[Ref.: #69480]	glucose-util	yes	84.373	yes
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	motile	no	87.71	yes
[Ref.: #69480]	aerobic	yes	81.8	yes
[Ref.: #69480]	flagellated	no	97.431	yes
[Ref.: #69480]	glucose-ferment	no	84.048	no

Availability in culture collections External links

[Ref.: #15886]

Culture collection no.

DSM 21686, JCM 19902, NCAIM B 02340

[Ref.: #85751]

SI-ID 403964

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermus composti sp. nov., isolated from oyster mushroom compost.	Vajna B, Kanizsai S, Keki Z, Marialigeti K, Schumann P, Toth EM	Int J Syst Evol Microbiol	10.1099/ijs.0.030866-0	2011	*

References

#15886

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21686

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30212

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26556 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85751

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403964.1 )

#26556

IJSEM 1486 2012 ( DOI 10.1099/ijs.0.030866-0 , PubMed 21856987 )

* These data were automatically processed and therefore are not curated

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Thermus composti strain JCM 19902

Thermus composti strain JCM 19902

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