Name: Vulcanithermus mediatlanticus TR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16734

Type strain:

Species: Vulcanithermus mediatlanticus

Strain Designation: TR

Culture col. no.: DSM 14978, JCM 11956, VKM B-2292

Strain history: M. Miroshnichenko strain TR.

NCBI tax ID(s): 947034 (strain), 206045 (species)

SI-ID 111796

JCM 11956, DSM 14978, VKM B-2292

Section

Vulcanithermus mediatlanticus TR is a microaerophile, thermophilic bacterium that was isolated from deep-sea hydrothermal vent.

microaerophile
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Vulcanithermus*
	Species	**Vulcanithermus mediatlanticus**
	Full Scientific Name (LPSN)	Vulcanithermus mediatlanticus Miroshnichenko et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5649]

Culture medium

VULCANITHERMUS MEDIUM (DSMZ Medium 977)

[Ref.: #5649]

Culture medium growth

[Ref.: #5649]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5649]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5649]			growth	65 °C
[Ref.: #67770]			growth	70 °C

[Ref.: #5649]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5649]

Oxygen tolerance

microaerophile

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5649]	Sample type/isolated from	deep-sea hydrothermal vent
[Ref.: #5649]	Geographic location (country and/or sea, region)	Mid-Atlantic Ridge (36°16'N, 33°54'W)
[Ref.: #5649]	Geographic location	36.2667°/-33.9000°

[Ref.: #67770]	Sample type/isolated from	Deep-sea hydrothermal chimney at the Rainbow vent field on the Mid-Atlantic Ridge
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ507298 (>99% sequence identity) for Vulcanithermus mediatlanticus subclade from Microbeatlas

Aquatic Samples	62
Soil Samples	25
Animal Samples	14
Plant Samples	2
Total Samples	103

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5649]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Vulcanithermus medioatlanticus 16S rRNA gene, type strain TR	AJ507298	1481	ENA	947034 tax ID	*

[Ref.: #5649]

GC-content

68.4 mol%

Availability in culture collections External links

[Ref.: #5649]

Culture collection no.

DSM 14978, JCM 11956, VKM B-2292

[Ref.: #85752]

SI-ID 111796

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vulcanithermus mediatlanticus gen. nov., sp. nov., a novel member of the family Thermaceae from a deep-sea hot vent.	Miroshnichenko ML, L'Haridon S, Nercessian O, Antipov AN, Kostrikina NA, Tindall BJ, Schumann P, Spring S, Stackebrandt E, Bonch-Osmolovskaya EA, Jeanthon C	Int J Syst Evol Microbiol	10.1099/ijs.0.02579-0	2003	*

References

#5649

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14978

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85752

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID111796.1 )

* These data were automatically processed and therefore are not curated

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