Name: Thermus oshimai SPS-17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16726

Type strain:

Species: Thermus oshimai

Strain Designation: SPS-17

Culture col. no.: DSM 12092, JCM 11603, ATCC 700435, BCRC 17423, NCIMB 13400

Strain history: NCIMB 13400 <-- R. A. D. Williams SPS17.

NCBI tax ID(s): 1123390 (strain), 56957 (species)

SI-ID 43933

ATCC 700435, NCIMB 13400, DSM 12092, JCM 11603, BCRC 17423, CCRC 17423

Other strains from Thermus oshimai

T. oshimai JL-2, DSM 103965
T. oshimai JCM 31668

Section

Thermus oshimai SPS-17 is a thermophilic, Gram-negative bacterium that was isolated from hot spring Saó.

Gram-negative
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus oshimai**
	Full Scientific Name (LPSN)	Thermus oshimai Williams et al. 1996

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.982

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4600]

Culture medium

CASTENHOLZ MEDIUM (DSMZ Medium 86)

[Ref.: #4600]

Culture medium growth

[Ref.: #4600]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4600]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4600]			growth	70 °C
[Ref.: #67770]			growth	65 °C

[Ref.: #4600]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.872

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4600]	Sample type/isolated from	hot spring Saó
[Ref.: #4600]	Geographic location (country and/or sea, region)	Pedro do Sul
[Ref.: #4600]	Country	Portugal
[Ref.: #4600]	Country ISO 3 Code	PRT
[Ref.: #4600]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hot spring effluent at S. Pedro do Sul
[Ref.: #67770]	Country	Portugal
[Ref.: #67770]	Country ISO 3 Code	PRT
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y18416 (>99% sequence identity) for Thermus oshimai subclade from Microbeatlas

Aquatic Samples	518
Soil Samples	156
Animal Samples	165
Plant Samples	88
Total Samples	927

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4600]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4600]	Thermus oshimai 16S rRNA gene, strain SPS-17T	Y18416	1462	ENA	56957 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermus oshimai DSM 12092	GCA_000373145	scaffold	GenBank	1123390 tax ID
[Ref.: #66792]	Thermus oshimai DSM 12092	1123390.3	wgs	PATRIC	1123390 tax ID	*
[Ref.: #66792]	Thermus oshimai DSM 12092	2515154080	draft	JGI IMG/M	1123390 tax ID	*

[Ref.: #67770]

GC-content

63 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermus oshimai DSM 12092 DSM 12092 NCBI: GCA_000373145.1
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus oshimai DSM 12092 PATRIC: 1123390.3
[Ref.: #69480]	motile	no	90.28	no
[Ref.: #69480]	flagellated	no	97.719	no
[Ref.: #69480]	gram-positive	no	95.935	no
[Ref.: #69480]	anaerobic	no	94.867	no
[Ref.: #69480]	aerobic	yes	76.43	no
[Ref.: #69480]	halophile	no	90.162	no
[Ref.: #69480]	spore-forming	no	91.873	no
[Ref.: #69480]	glucose-util	yes	89.291	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	no	87.779	no

Availability in culture collections External links

[Ref.: #4600]

Culture collection no.

DSM 12092, JCM 11603, ATCC 700435, BCRC 17423, NCIMB 13400

[Ref.: #85745]

SI-ID 43933

References

#4600

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12092

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85745

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43933.1 )

* These data were automatically processed and therefore are not curated

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Thermus oshimai DSM 12092 DSM 12092

Thermus oshimai DSM 12092

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